cleaning and fixing
This commit is contained in:
parent
a89f4b7fa1
commit
91a657ae57
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@ -17,7 +17,6 @@ require_once('xml_creater.php');
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* The protected member functions are the backbone functions which can be used for creating any ANDS RIF-CS records.
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*
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*/
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class ANDS_RIFCS {
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/**
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* \var $oai_pmh
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@ -257,4 +256,3 @@ class ANDS_RIFCS {
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$c->setAttribute('type',$subject_type);
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}
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} // end of class ANDS_RIFCS
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@ -115,7 +115,7 @@ class ANDS_TPA extends ANDS_RIFCS {
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$this->create_description_node(str_replace("\r\n","\n",$record['pub_descrip']));
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$this->create_description_node('The experiment was carried out between '.$record['start_date'].' and '.$record['end_date'],'note');
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$query = sprintf("select idr,stype from list_prj_ids_v2(%d) where stype in ('dataset','person')",$id_project);
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$query = sprintf("select idr,stype from list_prj_ids_v2 where stype in ('dataset','person')",$id_project);
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// echo $query;
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try {
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$res = $db->query($query,PDO::FETCH_ASSOC);
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@ -346,4 +346,3 @@ class ANDS_TPA extends ANDS_RIFCS {
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}
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}
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} // end of class ANDS_TPA
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@ -16,8 +16,7 @@ $metadataPrefix = $args['metadataPrefix'];
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// myhandler is a php file which will be included to generate metadata node.
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// $inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
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if (is_array($METADATAFORMATS[$metadataPrefix])
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&& isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
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if (is_array($METADATAFORMATS[$metadataPrefix]) && isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
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$inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
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} else {
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$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
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@ -42,7 +41,6 @@ if ($res===false) {
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$errors[] = oai_error('idDoesNotExist', '', $identifier);
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}
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if (!empty($errors)) {
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oai_exit();
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}
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@ -60,12 +58,8 @@ $identifier = $record[$SQL['identifier']];;
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$datestamp = formatDatestamp($record[$SQL['datestamp']]);
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if (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] == 'true') &&
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($deletedRecord == 'transient' || $deletedRecord == 'persistent')) {
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$status_deleted = TRUE;
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} else {
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$status_deleted = FALSE;
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}
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$status_deleted = (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] == 'true') &&
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($deletedRecord == 'transient' || $deletedRecord == 'persistent'));
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$outputObj = new ANDS_Response_XML($args);
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$cur_record = $outputObj->create_record();
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@ -77,4 +71,3 @@ if (!$status_deleted) {
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} else {
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$cur_header->setAttribute("status","deleted");
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}
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?>
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@ -18,6 +18,7 @@ if (SHOW_QUERY_ERROR) {
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echo 'XMLSCHEMA: ',XMLSCHEMA,"\n";
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echo "\n";
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}
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$outputObj = new ANDS_Response_XML($args);
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foreach($identifyResponse as $key => $val) {
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$outputObj->add2_verbNode($key, $val);
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@ -132,4 +133,3 @@ if(strlen($output)>10) {
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$des->appendXML($output);
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$outputObj->verbNode->appendChild($des);
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}
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?>
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@ -59,9 +59,7 @@ if (isset($mf)) {
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foreach($METADATAFORMATS as $key=>$val) {
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addMetedataFormat($outputObj,$key, $val);
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}
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}
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else { // a very unlikely event
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} else { // a very unlikely event
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$errors[] = oai_error('noMetadataFormats');
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oai_exit();
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}
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?>
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@ -54,8 +54,7 @@ if (!empty($errors)) {
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}
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// Load the handler
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if (is_array($METADATAFORMATS[$metadataPrefix])
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&& isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
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if (is_array($METADATAFORMATS[$metadataPrefix]) && isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
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$inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
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include($inc_record);
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} else {
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@ -72,8 +71,8 @@ if (empty($errors)) {
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$res = $db->prepare($query, array(PDO::ATTR_CURSOR => PDO::CURSOR_SCROLL));
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$r = $res->execute();
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if ($r===false) {
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if (SHOW_QUERY_ERROR) {
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if (($r===false) ) {
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if ( (SHOW_QUERY_ERROR)) {
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echo __FILE__.','.__LINE__."<br />";
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echo "Query: $query<br />\n";
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print_r($db->errorInfo());
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@ -88,7 +87,9 @@ if (empty($errors)) {
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}
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$num_rows = rowCount($metadataPrefix, $extquery, $db);
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if ($num_rows==0) {
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if (SHOW_QUERY_ERROR) {
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echo "Cannot find records: $query\n";
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}
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$errors[] = oai_error('noRecordsMatch');
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}
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}
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@ -144,12 +145,8 @@ while ($countrec++ < $maxrec) {
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$setspec = $record[$SQL['set']];
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// debug_var_dump('record', $record);
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if (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] === true) &&
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($deletedRecord == 'transient' || $deletedRecord == 'persistent')) {
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$status_deleted = TRUE;
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} else {
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$status_deleted = FALSE;
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}
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$status_deleted = (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] === true) &&
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($deletedRecord == 'transient' || $deletedRecord == 'persistent'));
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//debug_var_dump('status_deleted', $status_deleted);
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if($args['verb']=='ListRecords') {
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@ -179,4 +176,3 @@ if (isset($restoken)) {
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// end ListRecords
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if (SHOW_QUERY_ERROR) {echo "Debug listrecord.php reached to the end.\n\n";}
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?>
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@ -26,5 +26,3 @@ if (is_array($SETS)) {
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$errors[] = oai_error('noSetHierarchy');
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oai_exit();
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}
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?>
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6
oai2.php
6
oai2.php
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@ -152,7 +152,9 @@ if (isset($args['verb'])) {
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$errors[] = oai_error('noVerb');
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}
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if (!empty($errors)) { oai_exit(); }
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if (!empty($errors)) {
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oai_exit();
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}
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if ($compress) {
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ob_start('ob_gzhandler');
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@ -169,5 +171,3 @@ if(isset($outputObj)) {
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if ($compress) {
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ob_end_flush();
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}
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?>
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@ -119,12 +119,12 @@ $deletedRecord = $identifyResponse["deletedRecord"]; // a shorthand for checking
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//granularity is days
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//$granularity = 'YYYY-MM-DD';
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// granularity is seconds
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$identifyResponse["granularity"] = 'YYYY-MM-DD';
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$identifyResponse["granularity"] = 'YYYY-MM-DDThh:mm:ssZ';
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// this is appended if your granularity is seconds.
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// do not change
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if (strcmp($identifyResponse["granularity"],'YYYY-MM-DDThh:mm:ssZ')==0) {
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$identifyResponse["earliestDatestamp"] = $identifyResponse["earliestDatestamp"].'T00:00:00Z';
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// $identifyResponse["earliestDatestamp"] = $identifyResponse["earliestDatestamp"].'T00:00:00Z';
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}
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/** Compression methods supported. Optional (multiple). Default: null.
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@ -39,9 +39,10 @@ function debug_print_r($var_name, $var) {
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* \see SHOW_QUERY_ERROR in oaidp-config.php
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*/
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function debug_message($msg) {
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if (!SHOW_QUERY_ERROR) return;
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if (SHOW_QUERY_ERROR) {
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echo $msg,"\n";
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}
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}
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/** Check if provided correct arguments for a request.
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*
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@ -117,8 +118,7 @@ function checkArgs($args, $checkList) {
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* Used only by function <B>oai_error</B> code idDoesNotExist.
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* \param $url Type: string
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*/
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function is_valid_uri($url)
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{
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function is_valid_uri($url) {
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return((bool)preg_match('/^[-a-z\.0-9]+$/i', $url));
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}
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@ -134,8 +134,7 @@ function is_valid_uri($url)
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/** All datestamps used in this system are GMT even
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* return value from database has no TZ information
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*/
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function formatDatestamp($datestamp)
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{
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function formatDatestamp($datestamp) {
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return date("Y-m-d\TH:i:s\Z",strtotime($datestamp));
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}
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@ -168,8 +167,8 @@ function prepare_set_names() {
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}
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/** Finish a request when there is an error: send back errors. */
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function oai_exit()
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{
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function oai_exit() {
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// global $CONTENT_TYPE;
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header(CONTENT_TYPE);
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global $args,$errors,$compress;
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@ -183,14 +182,12 @@ function oai_exit()
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if ($compress) {
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ob_end_flush();
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}
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exit();
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}
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// ResumToken section
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/** Generate a string based on the current Unix timestamp in microseconds for creating resumToken file name. */
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function get_token()
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{
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function get_token() {
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list($usec, $sec) = explode(" ", microtime());
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return ((int)($usec*1000) + (int)($sec*1000));
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}
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@ -235,8 +232,7 @@ function readResumToken($resumptionToken) {
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* the useless condition id_column = id_column is just there to ease
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* further extensions to the query, please leave it as it is.
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*/
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function selectallQuery ($metadPrefix = "rif", $id = '')
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{
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function selectallQuery($metadPrefix = "rif", $id = ''){
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global $SQL;
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$query = "SELECT * FROM ".$SQL['table'] . " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
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if ($id != '') {
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@ -246,8 +242,7 @@ function selectallQuery ($metadPrefix = "rif", $id = '')
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}
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/** this function will return metadataFormat of a record */
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function idFormatQuery($id)
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{
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function idFormatQuery($id) {
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global $SQL;
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return 'select '.$SQL['metadataPrefix'].' FROM '.$SQL['table']. " WHERE ".$SQL['identifier']." = '".$id."'";
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}
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@ -255,8 +250,7 @@ function idFormatQuery($id)
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/** this function will return identifier and datestamp for all records
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* not very useful
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*/
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function idQuery ($metadPrefix = "rif", $id = '')
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{
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function idQuery($metadPrefix = "rif", $id = '') {
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global $SQL;
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if ($SQL['set'] != '') {
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@ -273,24 +267,21 @@ function idQuery ($metadPrefix = "rif", $id = '')
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}
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/** filter for until, appends to the end of SQL query */
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function untilQuery($until)
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{
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function untilQuery($until) {
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global $SQL;
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return ' AND '.$SQL['datestamp']." <= '$until'";
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}
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/** filter for from , appends to the end of SQL query */
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function fromQuery($from)
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{
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function fromQuery($from) {
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global $SQL;
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return ' AND '.$SQL['datestamp']." >= '$from'";
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}
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/** filter for sets, appends to the end of SQL query */
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function setQuery($set)
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{
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function setQuery($set) {
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global $SQL;
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// strip off "class:" which is not saved in database
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if(strstr($set,"class:")) $set = substr($set,6);
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@ -322,11 +313,9 @@ function process_pdo_error($query, $e) {
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* \param $query string
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* \return $res PDOStatement
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*/
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function exec_pdo_query($db, $query)
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{
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function exec_pdo_query($db, $query) {
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$res = $db->query($query);
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if ($res===false) {
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throw new Exception($query.":\nIt found nothing.\n");
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} else return $res;
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}
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?>
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@ -60,29 +60,29 @@ function oai_error($code, $argument = '', $value = '')
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{
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switch ($code) {
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case 'badArgument' :
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$text = "The argument '$argument' (value='$value') included in the request is not valid.";
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$text = "Attribute '{$argument}' is not allowed to appear in element 'request'";
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break;
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case 'badGranularity' :
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$text = "The value '$value' of the argument '$argument' is not valid.";
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$text = "The value '{$value}' of the argument '{$argument}' is not valid.";
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$code = 'badArgument';
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break;
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case 'badResumptionToken' :
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$text = "The resumptionToken '$value' does not exist or has already expired.";
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$text = "The resumptionToken '{$value}' does not exist or has already expired.";
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break;
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case 'badRequestMethod' :
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$text = "The request method '$argument' is unknown.";
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$text = "The request method '{$argument}' is unknown.";
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$code = 'badVerb';
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break;
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case 'badVerb' :
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$text = "The verb '$argument' provided in the request is illegal.";
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$text = "The verb '{$argument}' provided in the request is illegal.";
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break;
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case 'cannotDisseminateFormat' :
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$text = "The metadata format '$value' given by $argument is not supported by this repository.";
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$text = "The metadata format '{$value}' given by {$argument} is not supported by this repository.";
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break;
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case 'exclusiveArgument' :
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@ -91,7 +91,7 @@ function oai_error($code, $argument = '', $value = '')
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break;
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case 'idDoesNotExist' :
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$text = "The value '$value' of the identifier does not exist in this repository.";
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$text = "The value '{$value}' of the identifier does not exist in this repository.";
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if (!is_valid_uri($value)) {
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$code = 'badArgument';
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$text .= ' Invalidated URI has been detected.';
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@ -99,7 +99,7 @@ function oai_error($code, $argument = '', $value = '')
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break;
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case 'missingArgument' :
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$text = "The required argument '$argument' is missing in the request.";
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$text = "The required argument '{$argument}' is missing in the request.";
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$code = 'badArgument';
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break;
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@ -136,7 +136,7 @@ function oai_error($code, $argument = '', $value = '')
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break;
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default:
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$text = "Unknown error: code: '$code', argument: '$argument', value: '$value'";
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$text = "Unknown error: code: '{$code}', argument: '{$argument}', value: '{$value}'";
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$code = 'badArgument';
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}
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return $code."|".$text;
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