cleaning and fixing
This commit is contained in:
Usuario Moodle
parent
a89f4b7fa1
commit
91a657ae57
456
ands_rifcs.php
456
ands_rifcs.php
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@ -17,244 +17,242 @@ require_once('xml_creater.php');
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* The protected member functions are the backbone functions which can be used for creating any ANDS RIF-CS records.
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* The protected member functions are the backbone functions which can be used for creating any ANDS RIF-CS records.
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*
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*
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*/
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*/
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class ANDS_RIFCS {
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class ANDS_RIFCS {
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/**
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/**
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* \var $oai_pmh
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* \var $oai_pmh
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* Type: ANDS_Response_XML. Assigned by constructor. \see __construct
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* Type: ANDS_Response_XML. Assigned by constructor. \see __construct
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*/
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*/
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protected $oai_pmh;
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protected $oai_pmh;
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/** \var $working_node
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/** \var $working_node
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* Type: DOMElement. Assigned by constructor. \see __construct
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* Type: DOMElement. Assigned by constructor. \see __construct
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*/
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*/
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protected $working_node;
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protected $working_node;
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/**
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/**
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* Constructor
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* Constructor
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*
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*
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* \param $ands_response_doc ANDS_Response_XML. A XML Doc acts as the parent node.
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* \param $ands_response_doc ANDS_Response_XML. A XML Doc acts as the parent node.
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* \param $metadata_node DOMElement. The meta node which all subsequent nodes will be added to.
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* \param $metadata_node DOMElement. The meta node which all subsequent nodes will be added to.
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*/
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*/
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function __construct($ands_response_doc, $metadata_node) {
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function __construct($ands_response_doc, $metadata_node) {
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$this->oai_pmh = $ands_response_doc;
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$this->oai_pmh = $ands_response_doc;
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$this->working_node = $metadata_node;
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$this->working_node = $metadata_node;
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$this->create_regObjects();
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$this->create_regObjects();
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}
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}
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/**
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/**
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* A worker function for easily adding a newly created node to current XML Doc.
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* A worker function for easily adding a newly created node to current XML Doc.
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* @param $mom_node Type: DOMElement. Node the new child will be attached to.
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* @param $mom_node Type: DOMElement. Node the new child will be attached to.
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* @param $name Type: sting. The name of the child node is being added.
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* @param $name Type: sting. The name of the child node is being added.
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* @param $value Type: sting. The text content of the child node is being added. The default is ''.
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* @param $value Type: sting. The text content of the child node is being added. The default is ''.
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* @return DOMElement. The added child node
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* @return DOMElement. The added child node
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*/
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*/
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protected function addChild($mom_node,$name, $value='') {
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protected function addChild($mom_node,$name, $value='') {
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return $this->oai_pmh->addChild($mom_node,$name, $value);
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return $this->oai_pmh->addChild($mom_node,$name, $value);
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}
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}
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/** Create a registryObjects node to hold individual registryObject's.
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/** Create a registryObjects node to hold individual registryObject's.
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* This is only a holder node.
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* This is only a holder node.
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*/
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*/
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protected function create_regObjects() {
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protected function create_regObjects() {
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$this->working_node = $this->oai_pmh->addChild($this->working_node,'registryObjects');
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$this->working_node = $this->oai_pmh->addChild($this->working_node,'registryObjects');
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$this->working_node->setAttribute('xmlns',"http://ands.org.au/standards/rif-cs/registryObjects");
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$this->working_node->setAttribute('xmlns',"http://ands.org.au/standards/rif-cs/registryObjects");
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$this->working_node->setAttribute('xmlns:xsi',"http://www.w3.org/2001/XMLSchema-instance");
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$this->working_node->setAttribute('xmlns:xsi',"http://www.w3.org/2001/XMLSchema-instance");
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$this->working_node->setAttribute('xsi:schemaLocation','http://ands.org.au/standards/rif-cs/registryObjects http://services.ands.org.au/documentation/rifcs/1.2.0/schema/registryObjects.xsd');
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$this->working_node->setAttribute('xsi:schemaLocation','http://ands.org.au/standards/rif-cs/registryObjects http://services.ands.org.au/documentation/rifcs/1.2.0/schema/registryObjects.xsd');
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}
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}
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/** Create a single registryObject node. Each set has its own structure but they all have an attribute of group, a key node and an originatingSource node. The newly created node will be used as the working node.
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*
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* \param $group string, group attribute of the new registryObject node .
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* \param $key string, key node, used as an identifier.
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* \param $originatingSource string, an url of the data provider.
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*/
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protected function create_regObject($group, $key, $originatingSource) {
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$regObj_node = $this->addChild($this->working_node,'registryObject');
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$regObj_node->setAttribute('group',$group);
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$this->addChild($regObj_node,'key',$key);
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$this->addChild($regObj_node,'originatingSource',$originatingSource);
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$this->working_node = $regObj_node;
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}
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/** RIF-CS node is the content node of RIF-CS metadata node which starts from regObjects.
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* Each set supportted in RIF-CS has its own content model. The created node will be used as the
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* root node of this record for following nodes will be created.
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*
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* \param $set_name string, the name of set. For ANDS, they are Activity, Party and Collection
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* \param $set_type string, the type of set. For example, Activity can have project as a type.
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*/
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protected function create_rifcs_node($set_name, $set_type) {
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$this->working_node = $this->addChild($this->working_node, $set_name);
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$this->working_node->setAttribute('type', $set_type);
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}
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/**
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/** Create a single registryObject node. Each set has its own structure but they all have an attribute of group, a key node and an originatingSource node. The newly created node will be used as the working node.
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* Create a top level name node.
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*
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* @param $name_type string. Text for the types, can be either primary or abbreviated. Default: primary
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* \param $group string, group attribute of the new registryObject node .
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*
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* \param $key string, key node, used as an identifier.
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* @return DOMElement $added_name_node.
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* \param $originatingSource string, an url of the data provider.
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* The newly created node, it will be used for further expansion by adding namePart.
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*/
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*/
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protected function create_regObject($group, $key, $originatingSource) {
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protected function create_name_node($name_type = 'primary') {
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$regObj_node = $this->addChild($this->working_node,'registryObject');
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$c = $this->addChild($this->working_node, 'name');
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$regObj_node->setAttribute('group',$group);
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$c->setAttribute('type', $name_type);
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$this->addChild($regObj_node,'key',$key);
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return $c;
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$this->addChild($regObj_node,'originatingSource',$originatingSource);
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}
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$this->working_node = $regObj_node;
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}
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/**
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* Create a namePart of a name node.
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* @param $name_node
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* Type: DOMElement. Node of name_node created previously
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*
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* @param $value
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* Type: string. Text fror this namePart
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*
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* @param $part_type Type: string, used for group:person record. Types can be: titile, given, family
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*
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*/
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protected function create_namePart($name_node, $value, $part_type = '') {
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$c = $this->addChild($name_node, 'namePart', $value);
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if (!empty($part_type)) {
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$c->setAttribute('type', $part_type);
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}
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}
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/** Create related object. One RIF-CS can have more than one related object nodes,
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* each object is described by one node.
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* \param $key
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* Type: string. The identifier of the related object.
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* \param $relation_type
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* Type: string. Type of relationship.
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*
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*/
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protected function create_relatedObject($key,$relation_type) {
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$c = $this->addChild($this->working_node, 'relatedObject');
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$this->addChild($c,'key',$key);
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$c = $this->addChild($c, 'relation');
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// Mimick ANDS with enpty value to get both tags for relation. Only for better display
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// $c = $this->addChild($c, 'relation',' ');
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$c->setAttribute('type', $relation_type);
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}
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/** Create description node. One RIF-CS can have more than one description nodes.
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* Each description node has only one description.
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* \param $value Type: string. The content of the description.
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* \param $des_type Type: string. Type of the description. Types can be brief, full, acessRights and note. Default is 'brief'.
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*/
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protected function create_description_node($value, $des_type='brief') {
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$c = $this->addChild($this->working_node, 'description', $value);
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$c->setAttribute('type', $des_type);
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}
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/** Create local or other type of identifier inside of RIF-CS metadata node
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/** RIF-CS node is the content node of RIF-CS metadata node which starts from regObjects.
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* \param $key
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* Each set supportted in RIF-CS has its own content model. The created node will be used as the
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* Type string. The indentifier itself.
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* root node of this record for following nodes will be created.
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* \param $i_type
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*
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* Type string. Type of identifier. Can be abn, uri, local, etc.. Default is local.
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* \param $set_name string, the name of set. For ANDS, they are Activity, Party and Collection
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*/
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* \param $set_type string, the type of set. For example, Activity can have project as a type.
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protected function create_identifier_node($key, $i_type='local') {
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*/
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$c = $this->addChild($this->working_node, 'identifier',$key);
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protected function create_rifcs_node($set_name, $set_type) {
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$c->setAttribute('type', $i_type);
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$this->working_node = $this->addChild($this->working_node, $set_name);
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}
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$this->working_node->setAttribute('type', $set_type);
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}
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/** Location node is a holder node for either address or spatial nodes
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* \return DOMElement node, for adding address or spatial nodes.
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*/
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protected function create_location_node() {
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return $this->addChild($this->working_node, 'location');
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}
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/** Address node is a holder node for phiscal or electrical nodes.
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* \param $location_node Type: DOMElement. Location node created previously.
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* \return DOMElement
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*/
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protected function create_address_node($location_node) {
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return $this->addChild($location_node, 'address');
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}
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/** Electrical address node. Used for email, url, etc
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* \param $addr_node Type: DOMElement. Previously created address node.
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* \param $e_node Type: string. The content of the adding node.
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* \param $e_type Type: string. Default is email.
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*/
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protected function create_e_node($addr_node, $e_node, $e_type = 'email') {
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$c = $this->addChild($addr_node, 'electronic');
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$c->setAttribute('type', $e_type);
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$this->addChild($c,'value',$e_node);
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}
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/** Physical node is a holder node for phone or fax nodes.
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/**
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* \param $addr_node Type: DOMelement. Address node created before to which the new phiscial->addressPart will be attached.
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* Create a top level name node.
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* \param $number Type: string. Telephone or fax number as a string.
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* @param $name_type string. Text for the types, can be either primary or abbreviated. Default: primary
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* \param $fone_fax Type: string. Either telehoneNumber or faxNumber.
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*
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*/
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* @return DOMElement $added_name_node.
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protected function create_physcial_fone_fax($addr_node, $number,$fone_fax='telephoneNumber') {
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* The newly created node, it will be used for further expansion by adding namePart.
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$c = $this->addChild($addr_node, 'physical');
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*/
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$c = $this->addChild($c, 'addressPart', $number);
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protected function create_name_node($name_type = 'primary') {
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$c->setAttribute('type', $fone_fax);
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$c = $this->addChild($this->working_node, 'name');
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}
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$c->setAttribute('type', $name_type);
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return $c;
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}
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/** create address node under location node, either streetAddress or postalAddress.
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/**
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* But they are in text (one block) format.
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* Create a namePart of a name node.
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* \param $addr_node Type: DOMelement. Address node created before to which the new phiscial->addressPart will be attached.
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* @param $name_node
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* \param $txt_addr string, full street address in text block format
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* Type: DOMElement. Node of name_node created previously
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* \param $phys_type string, default is 'streetAddress', can be 'postalAddress'
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*
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*/
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* @param $value
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protected function create_physcial_addr_txt($addr_node, $txt_addr,$phys_type='streetAddress') {
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* Type: string. Text fror this namePart
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$c = $this->addChild($addr_node, 'physical');
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*
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$c->setAttribute('type', $phys_type);
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* @param $part_type Type: string, used for group:person record. Types can be: titile, given, family
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$c = $this->addChild($c, 'addressPart', $txt_addr);
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*
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$c->setAttribute('type', 'text');
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*/
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}
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protected function create_namePart($name_node, $value, $part_type = '') {
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$c = $this->addChild($name_node, 'namePart', $value);
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if (!empty($part_type)) {
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$c->setAttribute('type', $part_type);
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}
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}
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/** Create spatial node under a location node.
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/** Create related object. One RIF-CS can have more than one related object nodes,
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* \param $location_node Type: DOMElement. Location node where spatial node is being added to.
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* each object is described by one node.
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* \param $value Type: string. The value of spatial information. Default is local latitude and longitude.
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* \param $key
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* \param $sp_type Type: string. Type of spaitial informaion. Default is kmlPolyCoords.
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* Type: string. The identifier of the related object.
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*/
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* \param $relation_type
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protected function create_spatial_node($location_node, $value = '138.6396,-34.97063', $sp_type = 'kmlPolyCoords') {
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* Type: string. Type of relationship.
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$c = $this->addChild($location_node, 'spatial',$value);
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*
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$c->setAttribute('type',$sp_type);
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*/
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}
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protected function create_relatedObject($key,$relation_type) {
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$c = $this->addChild($this->working_node, 'relatedObject');
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$this->addChild($c,'key',$key);
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$c = $this->addChild($c, 'relation');
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// Mimick ANDS with enpty value to get both tags for relation. Only for better display
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// $c = $this->addChild($c, 'relation',' ');
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$c->setAttribute('type', $relation_type);
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}
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/** Create temporal coverage node for collection or activity records.
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/** Create description node. One RIF-CS can have more than one description nodes.
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* \param $values Type: 2-D array. The values of temporal coverage. It can has maximal two elements: one from 'dateFrom' and another for 'dateTo'.
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* Each description node has only one description.
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* Either can be ommited according to RIF-CS schema. Each element of $values is an array and has keys: date, type and format.
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* \param $value Type: string. The content of the description.
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* ['date'] is a string represents date. It has to be in W3CDTF or UTC format.
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* \param $des_type Type: string. Type of the description. Types can be brief, full, acessRights and note. Default is 'brief'.
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* ['type'] has to be either 'dateFrom' or 'dateTo'.
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*/
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* ['format'] is optional and its default is 'W3CDTF'. UTC format requires date has to be in UTC: dateTtimeZ.
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protected function create_description_node($value, $des_type='brief') {
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* It throws an exception if the input parameter is not an array.
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$c = $this->addChild($this->working_node, 'description', $value);
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*/
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$c->setAttribute('type', $des_type);
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protected function create_coverage_tempo($values) {
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}
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// Non array is not acceptable.
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if (!is_array($values)) { throw new Exception('The input of temporal coverage has to be an array of arraies with keys.');}
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$c = $this->addChild($this->working_node,'coverage');
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$t = $this->addChild($c,'temporal');
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foreach($values as $value) $this->create_coverage_tempo_date($t, $value);
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}
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/** Create temporal coverage node for collection or activity records.
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/** Create local or other type of identifier inside of RIF-CS metadata node
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* \param $t Type: DOMElement. The \<coverage\>\<temporal/\>\</coverage\> node to which \<date\> nodes will be attached to.
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* \param $key
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* \param $value Type: array. The value of temporal coverage. It has maxmimal three elements with keys: type, date and format.
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* Type string. The indentifier itself.
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* It throws an exception if the input parameter is not an array.
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* \param $i_type
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* \see create_coverage_tempo
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* Type string. Type of identifier. Can be abn, uri, local, etc.. Default is local.
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*/
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*/
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private function create_coverage_tempo_date($t, $value) {
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protected function create_identifier_node($key, $i_type='local') {
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if (!is_array($value)) { throw new Exception('The input of temporal coverage has to be an array with keys.');}
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$c = $this->addChild($this->working_node, 'identifier',$key);
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$d = $this->addChild($t,'date',$value['date']);
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$c->setAttribute('type', $i_type);
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$d->setAttribute('type',$value['type']);
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}
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if (isset($value['format'])) $d->setAttribute('dateFormat',$value['format']);
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else $d->setAttribute('dateFormat','W3CDTF');
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/** Location node is a holder node for either address or spatial nodes
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}
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* \return DOMElement node, for adding address or spatial nodes.
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*/
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/** Create a subject node for a researcher, project, project, etc
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protected function create_location_node() {
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* \param $value Type: string. A string representing the new namePart.
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return $this->addChild($this->working_node, 'location');
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* \param $subject_type Type: string. A string representing the type of subject. The default value is anzsrc-for.
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}
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*/
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protected function create_subject_node($value, $subject_type = 'anzsrc-for') {
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/** Address node is a holder node for phiscal or electrical nodes.
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if (empty($value)) return;
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* \param $location_node Type: DOMElement. Location node created previously.
|
||||||
$c = $this->addChild($this->working_node,'subject',$value);
|
* \return DOMElement
|
||||||
$c->setAttribute('type',$subject_type);
|
*/
|
||||||
}
|
protected function create_address_node($location_node) {
|
||||||
|
return $this->addChild($location_node, 'address');
|
||||||
|
}
|
||||||
|
|
||||||
|
/** Electrical address node. Used for email, url, etc
|
||||||
|
* \param $addr_node Type: DOMElement. Previously created address node.
|
||||||
|
* \param $e_node Type: string. The content of the adding node.
|
||||||
|
* \param $e_type Type: string. Default is email.
|
||||||
|
*/
|
||||||
|
protected function create_e_node($addr_node, $e_node, $e_type = 'email') {
|
||||||
|
$c = $this->addChild($addr_node, 'electronic');
|
||||||
|
$c->setAttribute('type', $e_type);
|
||||||
|
$this->addChild($c,'value',$e_node);
|
||||||
|
}
|
||||||
|
|
||||||
|
/** Physical node is a holder node for phone or fax nodes.
|
||||||
|
* \param $addr_node Type: DOMelement. Address node created before to which the new phiscial->addressPart will be attached.
|
||||||
|
* \param $number Type: string. Telephone or fax number as a string.
|
||||||
|
* \param $fone_fax Type: string. Either telehoneNumber or faxNumber.
|
||||||
|
*/
|
||||||
|
protected function create_physcial_fone_fax($addr_node, $number,$fone_fax='telephoneNumber') {
|
||||||
|
$c = $this->addChild($addr_node, 'physical');
|
||||||
|
$c = $this->addChild($c, 'addressPart', $number);
|
||||||
|
$c->setAttribute('type', $fone_fax);
|
||||||
|
}
|
||||||
|
|
||||||
|
/** create address node under location node, either streetAddress or postalAddress.
|
||||||
|
* But they are in text (one block) format.
|
||||||
|
* \param $addr_node Type: DOMelement. Address node created before to which the new phiscial->addressPart will be attached.
|
||||||
|
* \param $txt_addr string, full street address in text block format
|
||||||
|
* \param $phys_type string, default is 'streetAddress', can be 'postalAddress'
|
||||||
|
*/
|
||||||
|
protected function create_physcial_addr_txt($addr_node, $txt_addr,$phys_type='streetAddress') {
|
||||||
|
$c = $this->addChild($addr_node, 'physical');
|
||||||
|
$c->setAttribute('type', $phys_type);
|
||||||
|
$c = $this->addChild($c, 'addressPart', $txt_addr);
|
||||||
|
$c->setAttribute('type', 'text');
|
||||||
|
}
|
||||||
|
|
||||||
|
/** Create spatial node under a location node.
|
||||||
|
* \param $location_node Type: DOMElement. Location node where spatial node is being added to.
|
||||||
|
* \param $value Type: string. The value of spatial information. Default is local latitude and longitude.
|
||||||
|
* \param $sp_type Type: string. Type of spaitial informaion. Default is kmlPolyCoords.
|
||||||
|
*/
|
||||||
|
protected function create_spatial_node($location_node, $value = '138.6396,-34.97063', $sp_type = 'kmlPolyCoords') {
|
||||||
|
$c = $this->addChild($location_node, 'spatial',$value);
|
||||||
|
$c->setAttribute('type',$sp_type);
|
||||||
|
}
|
||||||
|
|
||||||
|
/** Create temporal coverage node for collection or activity records.
|
||||||
|
* \param $values Type: 2-D array. The values of temporal coverage. It can has maximal two elements: one from 'dateFrom' and another for 'dateTo'.
|
||||||
|
* Either can be ommited according to RIF-CS schema. Each element of $values is an array and has keys: date, type and format.
|
||||||
|
* ['date'] is a string represents date. It has to be in W3CDTF or UTC format.
|
||||||
|
* ['type'] has to be either 'dateFrom' or 'dateTo'.
|
||||||
|
* ['format'] is optional and its default is 'W3CDTF'. UTC format requires date has to be in UTC: dateTtimeZ.
|
||||||
|
* It throws an exception if the input parameter is not an array.
|
||||||
|
*/
|
||||||
|
protected function create_coverage_tempo($values) {
|
||||||
|
// Non array is not acceptable.
|
||||||
|
if (!is_array($values)) { throw new Exception('The input of temporal coverage has to be an array of arraies with keys.');}
|
||||||
|
$c = $this->addChild($this->working_node,'coverage');
|
||||||
|
$t = $this->addChild($c,'temporal');
|
||||||
|
foreach($values as $value) $this->create_coverage_tempo_date($t, $value);
|
||||||
|
}
|
||||||
|
|
||||||
|
/** Create temporal coverage node for collection or activity records.
|
||||||
|
* \param $t Type: DOMElement. The \<coverage\>\<temporal/\>\</coverage\> node to which \<date\> nodes will be attached to.
|
||||||
|
* \param $value Type: array. The value of temporal coverage. It has maxmimal three elements with keys: type, date and format.
|
||||||
|
* It throws an exception if the input parameter is not an array.
|
||||||
|
* \see create_coverage_tempo
|
||||||
|
*/
|
||||||
|
private function create_coverage_tempo_date($t, $value) {
|
||||||
|
if (!is_array($value)) { throw new Exception('The input of temporal coverage has to be an array with keys.');}
|
||||||
|
$d = $this->addChild($t,'date',$value['date']);
|
||||||
|
$d->setAttribute('type',$value['type']);
|
||||||
|
if (isset($value['format'])) $d->setAttribute('dateFormat',$value['format']);
|
||||||
|
else $d->setAttribute('dateFormat','W3CDTF');
|
||||||
|
}
|
||||||
|
|
||||||
|
/** Create a subject node for a researcher, project, project, etc
|
||||||
|
* \param $value Type: string. A string representing the new namePart.
|
||||||
|
* \param $subject_type Type: string. A string representing the type of subject. The default value is anzsrc-for.
|
||||||
|
*/
|
||||||
|
protected function create_subject_node($value, $subject_type = 'anzsrc-for') {
|
||||||
|
if (empty($value)) return;
|
||||||
|
$c = $this->addChild($this->working_node,'subject',$value);
|
||||||
|
$c->setAttribute('type',$subject_type);
|
||||||
|
}
|
||||||
} // end of class ANDS_RIFCS
|
} // end of class ANDS_RIFCS
|
||||||
|
|
||||||
|
|
|
||||||
595
ands_tpa.php
595
ands_tpa.php
|
|
@ -31,319 +31,318 @@ require_once('ands_rifcs.php');
|
||||||
*/
|
*/
|
||||||
|
|
||||||
class ANDS_TPA extends ANDS_RIFCS {
|
class ANDS_TPA extends ANDS_RIFCS {
|
||||||
//! Type: PDO. The database connection of the data source.
|
//! Type: PDO. The database connection of the data source.
|
||||||
//! \see __construct.
|
//! \see __construct.
|
||||||
private $db;
|
private $db;
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Constructor
|
* Constructor
|
||||||
* The first two parameters are used by its parent class ANDS_RIFCS. The third is its own private property.
|
* The first two parameters are used by its parent class ANDS_RIFCS. The third is its own private property.
|
||||||
*
|
*
|
||||||
* \param $ands_response_doc ANDS_Response_XML. A XML Doc acts as the parent node.
|
* \param $ands_response_doc ANDS_Response_XML. A XML Doc acts as the parent node.
|
||||||
* \param $metadata_node DOMElement. The meta node which all subsequent nodes will be added to.
|
* \param $metadata_node DOMElement. The meta node which all subsequent nodes will be added to.
|
||||||
* \param $db Type: PDO. The database connection of the data source.
|
* \param $db Type: PDO. The database connection of the data source.
|
||||||
*/
|
*/
|
||||||
function __construct($ands_response_doc, $metadata_node, $db) {
|
function __construct($ands_response_doc, $metadata_node, $db) {
|
||||||
parent::__construct($ands_response_doc, $metadata_node);
|
parent::__construct($ands_response_doc, $metadata_node);
|
||||||
$this->db = $db;
|
$this->db = $db;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
/**
|
|
||||||
* This is the general entrence of creating actual content. It calls different functions for different type of RIF-CS model.
|
|
||||||
* When anything goes wrong, e.g. found no record, or $set_name is not recognised, an exception will be thrown.
|
|
||||||
* And for this implementation, data are stored in a database therefore a PDO is needed. But the source can be any.
|
|
||||||
*
|
|
||||||
* \param $set_name Type: string. The name of set is going to be created. Can be one of activity, collection or party.
|
|
||||||
* \param $key Type: string. The main identifier used in ANDS system. There can be other identifier.
|
|
||||||
*
|
|
||||||
* \see create_activity, create_collection, create_party
|
|
||||||
*/
|
|
||||||
function create_obj_node($set_name, $key) {
|
|
||||||
$db = $this->db;
|
|
||||||
$set_name = strtolower($set_name);
|
|
||||||
if (in_array($set_name,prepare_set_names())) {
|
|
||||||
try {
|
|
||||||
// Get ori_id and which the original table is:
|
|
||||||
$query = "select ori_table_name, ori_id from oai_headers where oai_identifier = '".$key."'";
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$record = $res->fetch(PDO::FETCH_ASSOC);
|
|
||||||
} catch (PDOException $e) {
|
|
||||||
echo "$key returned no record.\n";
|
|
||||||
echo $e->getMessage();
|
|
||||||
}
|
|
||||||
|
|
||||||
$processor = 'create_'.substr($set_name,6);
|
/**
|
||||||
$this->create_regObject(REG_OBJ_GROUP, $key, MY_URI);
|
* This is the general entrence of creating actual content. It calls different functions for different type of RIF-CS model.
|
||||||
$this->$processor($record['ori_table_name'],$record['ori_id']);
|
* When anything goes wrong, e.g. found no record, or $set_name is not recognised, an exception will be thrown.
|
||||||
$this->create_identifier_node($key);
|
* And for this implementation, data are stored in a database therefore a PDO is needed. But the source can be any.
|
||||||
$this->create_identifier_node('table='.$record['ori_table_name'].'+id='.$record['ori_id']);
|
*
|
||||||
} else {
|
* \param $set_name Type: string. The name of set is going to be created. Can be one of activity, collection or party.
|
||||||
throw new Exception('Wrong set name was used: '.$set_name);
|
* \param $key Type: string. The main identifier used in ANDS system. There can be other identifier.
|
||||||
}
|
*
|
||||||
}
|
* \see create_activity, create_collection, create_party
|
||||||
|
*/
|
||||||
/** The processor for creating metadata node of Activity. Called from create_obj_node.
|
function create_obj_node($set_name, $key) {
|
||||||
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
$db = $this->db;
|
||||||
* \param $id_project Type: integer. Internal project id associated to this activity-project.
|
$set_name = strtolower($set_name);
|
||||||
* \see Function create_obj_node.
|
if (in_array($set_name,prepare_set_names())) {
|
||||||
*/
|
try {
|
||||||
private function create_activity($table_name, $id_project) {
|
// Get ori_id and which the original table is:
|
||||||
$db = $this->db;
|
$query = "select ori_table_name, ori_id from oai_headers where oai_identifier = '".$key."'";
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$record = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
|
} catch (PDOException $e) {
|
||||||
|
echo "$key returned no record.\n";
|
||||||
|
echo $e->getMessage();
|
||||||
|
}
|
||||||
|
|
||||||
|
$processor = 'create_'.substr($set_name,6);
|
||||||
|
$this->create_regObject(REG_OBJ_GROUP, $key, MY_URI);
|
||||||
|
$this->$processor($record['ori_table_name'],$record['ori_id']);
|
||||||
|
$this->create_identifier_node($key);
|
||||||
|
$this->create_identifier_node('table='.$record['ori_table_name'].'+id='.$record['ori_id']);
|
||||||
|
} else {
|
||||||
|
throw new Exception('Wrong set name was used: '.$set_name);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
/** The processor for creating metadata node of Activity. Called from create_obj_node.
|
||||||
|
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
||||||
|
* \param $id_project Type: integer. Internal project id associated to this activity-project.
|
||||||
|
* \see Function create_obj_node.
|
||||||
|
*/
|
||||||
|
private function create_activity($table_name, $id_project) {
|
||||||
|
$db = $this->db;
|
||||||
# // Get ori_id and which the original table is:
|
# // Get ori_id and which the original table is:
|
||||||
# $query = "select ori_table_name, ori_id from oai_headers where oai_identifier = '".$key."'";
|
# $query = "select ori_table_name, ori_id from oai_headers where oai_identifier = '".$key."'";
|
||||||
# $res = exec_pdo_query($db, $query);
|
# $res = exec_pdo_query($db, $query);
|
||||||
# $record = $res->fetch(PDO::FETCH_ASSOC);
|
# $record = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
# // $id_project will e used later, so save it:
|
# // $id_project will e used later, so save it:
|
||||||
# $id_project = $record['ori_id'];
|
# $id_project = $record['ori_id'];
|
||||||
// Get the content using the previously obtained infor:
|
// Get the content using the previously obtained infor:
|
||||||
$query = sprintf("select inter_no,start_date, end_date,pub_descrip from %s where id_project = %s",$table_name,$id_project);
|
$query = sprintf("select inter_no,start_date, end_date,pub_descrip from %s where id_project = %s",$table_name,$id_project);
|
||||||
|
|
||||||
try {
|
try {
|
||||||
$res = exec_pdo_query($db,$query);
|
$res = exec_pdo_query($db,$query);
|
||||||
$record = $res->fetch(PDO::FETCH_ASSOC);
|
$record = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
} catch (Exception $e) {
|
} catch (Exception $e) {
|
||||||
echo $e->getMessage();
|
echo $e->getMessage();
|
||||||
}
|
}
|
||||||
|
|
||||||
$this->create_rifcs_node('activity','project');
|
$this->create_rifcs_node('activity','project');
|
||||||
$c = $this->create_name_node();
|
$c = $this->create_name_node();
|
||||||
$this->create_namePart($c,'The Plant Accelerator Project '.$record['inter_no']);
|
$this->create_namePart($c,'The Plant Accelerator Project '.$record['inter_no']);
|
||||||
// Test codes for rich format.
|
// Test codes for rich format.
|
||||||
# // \n works
|
# // \n works
|
||||||
# $this->create_description_node(sprintf("Line one:%s,\nLine two:%s.\nThird",'a','b'));
|
# $this->create_description_node(sprintf("Line one:%s,\nLine two:%s.\nThird",'a','b'));
|
||||||
$this->create_description_node(str_replace("\r\n","\n",$record['pub_descrip']));
|
$this->create_description_node(str_replace("\r\n","\n",$record['pub_descrip']));
|
||||||
|
|
||||||
$this->create_description_node('The experiment was carried out between '.$record['start_date'].' and '.$record['end_date'],'note');
|
$this->create_description_node('The experiment was carried out between '.$record['start_date'].' and '.$record['end_date'],'note');
|
||||||
$query = sprintf("select idr,stype from list_prj_ids_v2(%d) where stype in ('dataset','person')",$id_project);
|
$query = sprintf("select idr,stype from list_prj_ids_v2 where stype in ('dataset','person')",$id_project);
|
||||||
// echo $query;
|
// echo $query;
|
||||||
try {
|
try {
|
||||||
$res = $db->query($query,PDO::FETCH_ASSOC);
|
$res = $db->query($query,PDO::FETCH_ASSOC);
|
||||||
if ($res==false) {
|
if ($res==false) {
|
||||||
throw new Exception($query."\nIt found nothing.\n");
|
throw new Exception($query."\nIt found nothing.\n");
|
||||||
}
|
}
|
||||||
foreach ($res as $record) {
|
foreach ($res as $record) {
|
||||||
switch ($record['stype']) {
|
switch ($record['stype']) {
|
||||||
case 'dataset':
|
case 'dataset':
|
||||||
$this->create_relatedObject($record['idr'],'hasOutput');
|
$this->create_relatedObject($record['idr'],'hasOutput');
|
||||||
break;
|
break;
|
||||||
case 'person':
|
case 'person':
|
||||||
$this->create_relatedObject($record['idr'],'isManagedBy');
|
$this->create_relatedObject($record['idr'],'isManagedBy');
|
||||||
break;
|
break;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
// The Plant Accelerator always participates in Activity
|
// The Plant Accelerator always participates in Activity
|
||||||
$this->create_relatedObject('0874ad60-ab4d-11df-aebd-0002a5d5c51b','hasParticipant');
|
$this->create_relatedObject('0874ad60-ab4d-11df-aebd-0002a5d5c51b','hasParticipant');
|
||||||
} catch (PDOException $e) {
|
} catch (PDOException $e) {
|
||||||
process_pdo_error($query, $e);
|
process_pdo_error($query, $e);
|
||||||
}// end of try-catch block
|
}// end of try-catch block
|
||||||
} // end of function create_activity($key, $id_project)
|
} // end of function create_activity($key, $id_project)
|
||||||
|
|
||||||
/** The processor for creating metadata node of Collection. Called from create_obj_node.
|
|
||||||
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
|
||||||
* \param $id_collect Type: integer. Internal collection id associated to this collection-dataset.
|
|
||||||
* \see Function create_obj_node.
|
|
||||||
*/
|
|
||||||
private function create_collection($table_name, $id_collect) {
|
|
||||||
$db = $this->db;
|
|
||||||
try {
|
|
||||||
$query = sprintf("select plant,variety,start_date,end_date,img_freq,anzsrc from %s where id_collect = %s",$table_name,$id_collect);
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$dataset = $res->fetch(PDO::FETCH_ASSOC);
|
|
||||||
|
|
||||||
$res = exec_pdo_query($db, $query);
|
/** The processor for creating metadata node of Collection. Called from create_obj_node.
|
||||||
$record = $res->fetch(PDO::FETCH_ASSOC);
|
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
||||||
|
* \param $id_collect Type: integer. Internal collection id associated to this collection-dataset.
|
||||||
$query = 'select id_rep, inter_no, id_project from tpa_project_ids where id_collect = '.$id_collect;
|
* \see Function create_obj_node.
|
||||||
$res = exec_pdo_query($db, $query);
|
*/
|
||||||
$prj_info = $res->fetch(PDO::FETCH_ASSOC);
|
private function create_collection($table_name, $id_collect) {
|
||||||
|
$db = $this->db;
|
||||||
$query = 'select email from tpa_person where id_rep = '.$prj_info['id_rep'];
|
try {
|
||||||
$res = exec_pdo_query($db, $query);
|
$query = sprintf("select plant,variety,start_date,end_date,img_freq,anzsrc from %s where id_collect = %s",$table_name,$id_collect);
|
||||||
$email = $res->fetch(PDO::FETCH_ASSOC);
|
$res = exec_pdo_query($db, $query);
|
||||||
} catch (PDOException $e) {
|
$dataset = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
echo $query.' was failed\n';
|
|
||||||
echo $e->getMessage();
|
|
||||||
}
|
|
||||||
|
|
||||||
$this->create_rifcs_node('collection','dataset');
|
|
||||||
// Get the project inter_no as the name of this dataset
|
|
||||||
$c = $this->create_name_node();
|
|
||||||
$this->create_namePart($c,'Data set of Plant Accelerator Project '.$prj_info['inter_no']);
|
|
||||||
|
|
||||||
// locatin node: contact person
|
|
||||||
$l_node = $this->create_location_node();
|
|
||||||
$a_node = $this->create_address_node($l_node);
|
|
||||||
$this->create_e_node($a_node, $email['email']);
|
|
||||||
// location node: TPA's physical address
|
|
||||||
$l_node = $this->create_location_node();
|
|
||||||
$a_node = $this->create_address_node($l_node);
|
|
||||||
$this->create_physcial_addr_txt($a_node, 'The Plant Accelerator, Hartley Grove, Urrbrae, SA 5064') ;
|
|
||||||
// Temporal coverage of colletion
|
|
||||||
$dates = array(array('date'=>$dataset['start_date'],'type'=>'dateFrom'),array('date'=>$dataset['end_date'],'type'=>'dateTo'));
|
|
||||||
$this->create_coverage_tempo($dates);
|
|
||||||
// subject
|
|
||||||
$this->create_subject_node($dataset['aznsrc']);
|
|
||||||
// relatedOjbects
|
|
||||||
$query = sprintf("select idr,stype from list_prj_ids_v2(%d) where stype in ('project','person')",$prj_info['id_project']);
|
|
||||||
try {
|
|
||||||
$res = $db->query($query,PDO::FETCH_ASSOC);
|
|
||||||
if ($res==false) {
|
|
||||||
throw new Exception($query."\nIt found nothing.\n");
|
|
||||||
}
|
|
||||||
foreach ($res as $record) {
|
|
||||||
switch ($record['stype']) {
|
|
||||||
case 'project':
|
|
||||||
$this->create_relatedObject($record['idr'],'isOutputOf');
|
|
||||||
break;
|
|
||||||
case 'person':
|
|
||||||
$this->create_relatedObject($record['idr'],'isOwnedBy');
|
|
||||||
break;
|
|
||||||
}
|
|
||||||
}
|
|
||||||
} catch (PDOException $e) {
|
|
||||||
process_pdo_error($query, $e);
|
|
||||||
}// end of try-catch block
|
|
||||||
|
|
||||||
// right of accessing
|
|
||||||
$this->create_description_node('For information on rights and access to this dataset, please contact the owner.','accessRights');
|
|
||||||
|
|
||||||
// image data:
|
$res = exec_pdo_query($db, $query);
|
||||||
$imgs = ''; $ex_conf = '';
|
$record = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
$dic = array('im_type_rgb'=>'RGB','im_type_nir'=>'NIR','im_type_fir'=>'FIR','im_type_nir_roots'=>'NIR Roots','im_type_fluo'=>'Fluorescence');
|
|
||||||
$query = 'select im_type_rgb,im_type_nir,im_type_fir,im_type_nir_roots,im_type_fluo, lines, treatments, replicates, total from ands_collection where id_collect = '. $id_collect;
|
|
||||||
$res = $db->query($query,PDO::FETCH_ASSOC);
|
|
||||||
if ($res==false) {
|
|
||||||
throw new Exception($query."\nIt found nothing.\n");
|
|
||||||
}
|
|
||||||
$info = $res->fetch();
|
|
||||||
foreach ($info as $item => $v) {
|
|
||||||
switch ($item) {
|
|
||||||
case 'im_type_rgb':
|
|
||||||
case 'im_type_nir':
|
|
||||||
case 'im_type_fir':
|
|
||||||
case 'im_type_nir_roots':
|
|
||||||
case 'im_type_fluo':
|
|
||||||
if (!empty($v)) { $imgs .= $dic[$item].', '; }
|
|
||||||
break;
|
|
||||||
default:
|
|
||||||
if (!empty($v)) { $ex_conf .= ' '.$item.' = '.$v.', '; }
|
|
||||||
break;
|
|
||||||
}
|
|
||||||
}
|
|
||||||
if (empty($imgs)) $imgs = "Images data of RGB, FIR, NIR, NIR Roots and Fluorescence cameras., ";
|
|
||||||
$imgs = substr($imgs,0,-2);
|
|
||||||
if (!empty($ex_conf)) $imgs = $imgs."\n".substr($ex_conf,0,-2);
|
|
||||||
$this->create_description_node($imgs);
|
|
||||||
// imaging frequency
|
|
||||||
$this->create_description_node('Imaging frequency: '.$dataset['img_freq'],'note');
|
|
||||||
} // end of function create_collection($key,$id_collect)
|
|
||||||
|
|
||||||
/** The processor for creating metadata node of Party. Called from create_obj_node. As party-person is different to party-group, there are two sub-functions are called accordingly.
|
|
||||||
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
|
||||||
* \param $id_party Type: integer. Internal party id associated to this party.
|
|
||||||
* \see Function create_obj_node.
|
|
||||||
*/
|
|
||||||
private function create_party($table_name, $id_party) {
|
|
||||||
$db = $this->db;
|
|
||||||
$query = sprintf("SELECT set_type FROM oai_headers WHERE ori_table_name = '%s' AND ori_id = %s",$table_name,$id_party);
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$party_type = $res->fetch(PDO::FETCH_ASSOC);
|
|
||||||
|
|
||||||
if (in_array($party_type['set_type'],array('person','group'))) {
|
|
||||||
$this->create_rifcs_node('party',$party_type['set_type']);
|
|
||||||
|
|
||||||
if ($party_type['set_type']=='person') {
|
$query = 'select id_rep, inter_no, id_project from tpa_project_ids where id_collect = '.$id_collect;
|
||||||
$this->create_person($table_name, $id_party);
|
$res = exec_pdo_query($db, $query);
|
||||||
} elseif ($party_type['set_type']=='group') {
|
$prj_info = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
$this->create_group($table_name, $id_party); }
|
|
||||||
} else {
|
|
||||||
throw new Exception('Unsupported set_type: '.$party_type['set_type']);
|
|
||||||
}
|
|
||||||
} // end of function create_part($key,$id_party)
|
|
||||||
|
|
||||||
/** The processor for creating metadata node of Party. Called from create_obj_node. As party-person is different to party-group, there are two sub-functions are called accordingly.
|
$query = 'select email from tpa_person where id_rep = '.$prj_info['id_rep'];
|
||||||
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
$res = exec_pdo_query($db, $query);
|
||||||
* \param $id_party Type: integer. Internal party id associated to this party-person.
|
$email = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
* \see Function create_party.
|
} catch (PDOException $e) {
|
||||||
*/
|
echo $query.' was failed\n';
|
||||||
private function create_person($table_name, $id_party) {
|
echo $e->getMessage();
|
||||||
$db = $this->db;
|
}
|
||||||
$query = sprintf("SELECT id_org, title, first_name, family_name, tel, fax, email, www, address, post_code, city,state,country,duty FROM %s WHERE id_rep = %s",$table_name, $id_party);
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$info = $res->fetch(PDO::FETCH_ASSOC);
|
|
||||||
$c = $this->create_name_node();
|
|
||||||
if (!empty($info['title'])) $this->create_namePart($c,$info['title'],'title');
|
|
||||||
$this->create_namePart($c,$info['family_name'],'family');
|
|
||||||
$this->create_namePart($c,$info['first_name'],'given');
|
|
||||||
|
|
||||||
// locatin node: contact person
|
|
||||||
$l_node = $this->create_location_node();
|
|
||||||
$a_node = $this->create_address_node($l_node);
|
|
||||||
$this->create_e_node($a_node, $info['email']);
|
|
||||||
if (!empty($info['www'])) $this->create_e_node($a_node, $info['www'],'url');
|
|
||||||
$this->create_physcial_fone_fax($a_node, $info['tel'],'telephoneNumber');
|
|
||||||
if (!empty($info['fax'])) $this->create_physcial_fone_fax($a_node, $info['fax'],'faxNumber');
|
|
||||||
$add_txt = trim($info['address']).', '.$info['city'].' '.$info['state'].' '.$info['post_code'].', '.$info['country'];
|
|
||||||
// the strlength of ', , ' is 6
|
|
||||||
if (strlen($add_txt)>6) $this->create_physcial_addr_txt($a_node,$add_txt);
|
|
||||||
|
|
||||||
// related objects:
|
|
||||||
// their group: id_customer is a foreign key of tpa_organisation
|
|
||||||
$query = sprintf("SELECT get_identifier('tpa_organisation',%s)",$info['id_org']);
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$info = $res->fetch(PDO::FETCH_NUM);
|
|
||||||
$this->create_relatedObject($info[0],'isMemberOf');
|
|
||||||
|
|
||||||
// their activities
|
|
||||||
$query = "SELECT list_persons_objs($id_party,'project')";
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$info = $res->fetch(PDO::FETCH_NUM);
|
|
||||||
foreach ($info as $item) {
|
|
||||||
$this->create_relatedObject($item,'isManagerOf');
|
|
||||||
}
|
|
||||||
// their collections
|
|
||||||
$query = "SELECT list_persons_objs($id_party,'dataset')";
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$info = $res->fetch(PDO::FETCH_NUM);
|
|
||||||
foreach ($info as $item) {
|
|
||||||
$this->create_relatedObject($item,'isOwnerOf');
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
/** The processor for creating metadata node of Party. Called from create_obj_node. As party-person is different to party-group, there are two sub-functions are called accordingly.
|
|
||||||
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
|
||||||
* \param $id_party Type: integer. Internal party id associated to this party-group.
|
|
||||||
* \see Function create_party.
|
|
||||||
*/
|
|
||||||
private function create_group($table_name, $id_party) {
|
|
||||||
$db = $this->db;
|
|
||||||
// echo 'table: ',$table_name,' party: ',$id_party,"\n";
|
|
||||||
$query = sprintf("SELECT customer_name, abn, post_code, address, city, state, country, tel, fax, email, www, description FROM %s WHERE id_org = %s",$table_name, $id_party);
|
|
||||||
//echo $query;
|
|
||||||
$res = exec_pdo_query($db, $query);
|
|
||||||
$info = $res->fetch(PDO::FETCH_ASSOC);
|
|
||||||
$c = $this->create_name_node();
|
|
||||||
$this->create_namePart($c,$info['customer_name']);
|
|
||||||
if (!empty($info['abn'])) $this->create_identifier_node($info['abn'],'abn');
|
|
||||||
|
|
||||||
if (!empty($info['description'])) $this->create_description_node($info['description']);
|
$this->create_rifcs_node('collection','dataset');
|
||||||
|
// Get the project inter_no as the name of this dataset
|
||||||
$l_node = $this->create_location_node();
|
$c = $this->create_name_node();
|
||||||
$a_node = $this->create_address_node($l_node);
|
$this->create_namePart($c,'Data set of Plant Accelerator Project '.$prj_info['inter_no']);
|
||||||
$this->create_physcial_fone_fax($a_node, $info['tel'],'telephoneNumber');
|
|
||||||
$this->create_physcial_fone_fax($a_node, $info['fax'],'faxNumber');
|
// locatin node: contact person
|
||||||
$add_txt = trim($info['address']).', '.$info['city'].' '.$info['state'].' '.$info['post_code'].', '.$info['country'];
|
$l_node = $this->create_location_node();
|
||||||
$this->create_physcial_addr_txt($a_node,$add_txt);
|
$a_node = $this->create_address_node($l_node);
|
||||||
|
$this->create_e_node($a_node, $email['email']);
|
||||||
// related objects:
|
// location node: TPA's physical address
|
||||||
// their members:
|
$l_node = $this->create_location_node();
|
||||||
$query = "SELECT list_pub_members($id_party)";
|
$a_node = $this->create_address_node($l_node);
|
||||||
$res = exec_pdo_query($db, $query);
|
$this->create_physcial_addr_txt($a_node, 'The Plant Accelerator, Hartley Grove, Urrbrae, SA 5064') ;
|
||||||
$info = $res->fetch(PDO::FETCH_NUM);
|
// Temporal coverage of colletion
|
||||||
foreach ($info as $item) {
|
$dates = array(array('date'=>$dataset['start_date'],'type'=>'dateFrom'),array('date'=>$dataset['end_date'],'type'=>'dateTo'));
|
||||||
$this->create_relatedObject($item,'hasMember');
|
$this->create_coverage_tempo($dates);
|
||||||
}
|
// subject
|
||||||
}
|
$this->create_subject_node($dataset['aznsrc']);
|
||||||
|
// relatedOjbects
|
||||||
|
$query = sprintf("select idr,stype from list_prj_ids_v2(%d) where stype in ('project','person')",$prj_info['id_project']);
|
||||||
|
try {
|
||||||
|
$res = $db->query($query,PDO::FETCH_ASSOC);
|
||||||
|
if ($res==false) {
|
||||||
|
throw new Exception($query."\nIt found nothing.\n");
|
||||||
|
}
|
||||||
|
foreach ($res as $record) {
|
||||||
|
switch ($record['stype']) {
|
||||||
|
case 'project':
|
||||||
|
$this->create_relatedObject($record['idr'],'isOutputOf');
|
||||||
|
break;
|
||||||
|
case 'person':
|
||||||
|
$this->create_relatedObject($record['idr'],'isOwnedBy');
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
} catch (PDOException $e) {
|
||||||
|
process_pdo_error($query, $e);
|
||||||
|
}// end of try-catch block
|
||||||
|
|
||||||
|
// right of accessing
|
||||||
|
$this->create_description_node('For information on rights and access to this dataset, please contact the owner.','accessRights');
|
||||||
|
|
||||||
|
// image data:
|
||||||
|
$imgs = ''; $ex_conf = '';
|
||||||
|
$dic = array('im_type_rgb'=>'RGB','im_type_nir'=>'NIR','im_type_fir'=>'FIR','im_type_nir_roots'=>'NIR Roots','im_type_fluo'=>'Fluorescence');
|
||||||
|
$query = 'select im_type_rgb,im_type_nir,im_type_fir,im_type_nir_roots,im_type_fluo, lines, treatments, replicates, total from ands_collection where id_collect = '. $id_collect;
|
||||||
|
$res = $db->query($query,PDO::FETCH_ASSOC);
|
||||||
|
if ($res==false) {
|
||||||
|
throw new Exception($query."\nIt found nothing.\n");
|
||||||
|
}
|
||||||
|
$info = $res->fetch();
|
||||||
|
foreach ($info as $item => $v) {
|
||||||
|
switch ($item) {
|
||||||
|
case 'im_type_rgb':
|
||||||
|
case 'im_type_nir':
|
||||||
|
case 'im_type_fir':
|
||||||
|
case 'im_type_nir_roots':
|
||||||
|
case 'im_type_fluo':
|
||||||
|
if (!empty($v)) { $imgs .= $dic[$item].', '; }
|
||||||
|
break;
|
||||||
|
default:
|
||||||
|
if (!empty($v)) { $ex_conf .= ' '.$item.' = '.$v.', '; }
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
if (empty($imgs)) $imgs = "Images data of RGB, FIR, NIR, NIR Roots and Fluorescence cameras., ";
|
||||||
|
$imgs = substr($imgs,0,-2);
|
||||||
|
if (!empty($ex_conf)) $imgs = $imgs."\n".substr($ex_conf,0,-2);
|
||||||
|
$this->create_description_node($imgs);
|
||||||
|
// imaging frequency
|
||||||
|
$this->create_description_node('Imaging frequency: '.$dataset['img_freq'],'note');
|
||||||
|
} // end of function create_collection($key,$id_collect)
|
||||||
|
|
||||||
|
/** The processor for creating metadata node of Party. Called from create_obj_node. As party-person is different to party-group, there are two sub-functions are called accordingly.
|
||||||
|
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
||||||
|
* \param $id_party Type: integer. Internal party id associated to this party.
|
||||||
|
* \see Function create_obj_node.
|
||||||
|
*/
|
||||||
|
private function create_party($table_name, $id_party) {
|
||||||
|
$db = $this->db;
|
||||||
|
$query = sprintf("SELECT set_type FROM oai_headers WHERE ori_table_name = '%s' AND ori_id = %s",$table_name,$id_party);
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$party_type = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
|
|
||||||
|
if (in_array($party_type['set_type'],array('person','group'))) {
|
||||||
|
$this->create_rifcs_node('party',$party_type['set_type']);
|
||||||
|
|
||||||
|
if ($party_type['set_type']=='person') {
|
||||||
|
$this->create_person($table_name, $id_party);
|
||||||
|
} elseif ($party_type['set_type']=='group') {
|
||||||
|
$this->create_group($table_name, $id_party); }
|
||||||
|
} else {
|
||||||
|
throw new Exception('Unsupported set_type: '.$party_type['set_type']);
|
||||||
|
}
|
||||||
|
} // end of function create_part($key,$id_party)
|
||||||
|
|
||||||
|
/** The processor for creating metadata node of Party. Called from create_obj_node. As party-person is different to party-group, there are two sub-functions are called accordingly.
|
||||||
|
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
||||||
|
* \param $id_party Type: integer. Internal party id associated to this party-person.
|
||||||
|
* \see Function create_party.
|
||||||
|
*/
|
||||||
|
private function create_person($table_name, $id_party) {
|
||||||
|
$db = $this->db;
|
||||||
|
$query = sprintf("SELECT id_org, title, first_name, family_name, tel, fax, email, www, address, post_code, city,state,country,duty FROM %s WHERE id_rep = %s",$table_name, $id_party);
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$info = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
|
$c = $this->create_name_node();
|
||||||
|
if (!empty($info['title'])) $this->create_namePart($c,$info['title'],'title');
|
||||||
|
$this->create_namePart($c,$info['family_name'],'family');
|
||||||
|
$this->create_namePart($c,$info['first_name'],'given');
|
||||||
|
|
||||||
|
// locatin node: contact person
|
||||||
|
$l_node = $this->create_location_node();
|
||||||
|
$a_node = $this->create_address_node($l_node);
|
||||||
|
$this->create_e_node($a_node, $info['email']);
|
||||||
|
if (!empty($info['www'])) $this->create_e_node($a_node, $info['www'],'url');
|
||||||
|
$this->create_physcial_fone_fax($a_node, $info['tel'],'telephoneNumber');
|
||||||
|
if (!empty($info['fax'])) $this->create_physcial_fone_fax($a_node, $info['fax'],'faxNumber');
|
||||||
|
$add_txt = trim($info['address']).', '.$info['city'].' '.$info['state'].' '.$info['post_code'].', '.$info['country'];
|
||||||
|
// the strlength of ', , ' is 6
|
||||||
|
if (strlen($add_txt)>6) $this->create_physcial_addr_txt($a_node,$add_txt);
|
||||||
|
|
||||||
|
// related objects:
|
||||||
|
// their group: id_customer is a foreign key of tpa_organisation
|
||||||
|
$query = sprintf("SELECT get_identifier('tpa_organisation',%s)",$info['id_org']);
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$info = $res->fetch(PDO::FETCH_NUM);
|
||||||
|
$this->create_relatedObject($info[0],'isMemberOf');
|
||||||
|
|
||||||
|
// their activities
|
||||||
|
$query = "SELECT list_persons_objs($id_party,'project')";
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$info = $res->fetch(PDO::FETCH_NUM);
|
||||||
|
foreach ($info as $item) {
|
||||||
|
$this->create_relatedObject($item,'isManagerOf');
|
||||||
|
}
|
||||||
|
// their collections
|
||||||
|
$query = "SELECT list_persons_objs($id_party,'dataset')";
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$info = $res->fetch(PDO::FETCH_NUM);
|
||||||
|
foreach ($info as $item) {
|
||||||
|
$this->create_relatedObject($item,'isOwnerOf');
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
/** The processor for creating metadata node of Party. Called from create_obj_node. As party-person is different to party-group, there are two sub-functions are called accordingly.
|
||||||
|
* \param $table_name Type: string. The table name will be used to retrieve data from.
|
||||||
|
* \param $id_party Type: integer. Internal party id associated to this party-group.
|
||||||
|
* \see Function create_party.
|
||||||
|
*/
|
||||||
|
private function create_group($table_name, $id_party) {
|
||||||
|
$db = $this->db;
|
||||||
|
// echo 'table: ',$table_name,' party: ',$id_party,"\n";
|
||||||
|
$query = sprintf("SELECT customer_name, abn, post_code, address, city, state, country, tel, fax, email, www, description FROM %s WHERE id_org = %s",$table_name, $id_party);
|
||||||
|
//echo $query;
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$info = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
|
$c = $this->create_name_node();
|
||||||
|
$this->create_namePart($c,$info['customer_name']);
|
||||||
|
if (!empty($info['abn'])) $this->create_identifier_node($info['abn'],'abn');
|
||||||
|
|
||||||
|
if (!empty($info['description'])) $this->create_description_node($info['description']);
|
||||||
|
|
||||||
|
$l_node = $this->create_location_node();
|
||||||
|
$a_node = $this->create_address_node($l_node);
|
||||||
|
$this->create_physcial_fone_fax($a_node, $info['tel'],'telephoneNumber');
|
||||||
|
$this->create_physcial_fone_fax($a_node, $info['fax'],'faxNumber');
|
||||||
|
$add_txt = trim($info['address']).', '.$info['city'].' '.$info['state'].' '.$info['post_code'].', '.$info['country'];
|
||||||
|
$this->create_physcial_addr_txt($a_node,$add_txt);
|
||||||
|
|
||||||
|
// related objects:
|
||||||
|
// their members:
|
||||||
|
$query = "SELECT list_pub_members($id_party)";
|
||||||
|
$res = exec_pdo_query($db, $query);
|
||||||
|
$info = $res->fetch(PDO::FETCH_NUM);
|
||||||
|
foreach ($info as $item) {
|
||||||
|
$this->create_relatedObject($item,'hasMember');
|
||||||
|
}
|
||||||
|
}
|
||||||
} // end of class ANDS_TPA
|
} // end of class ANDS_TPA
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -16,11 +16,10 @@ $metadataPrefix = $args['metadataPrefix'];
|
||||||
// myhandler is a php file which will be included to generate metadata node.
|
// myhandler is a php file which will be included to generate metadata node.
|
||||||
// $inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
|
// $inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
|
||||||
|
|
||||||
if (is_array($METADATAFORMATS[$metadataPrefix])
|
if (is_array($METADATAFORMATS[$metadataPrefix]) && isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
|
||||||
&& isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
|
$inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
|
||||||
$inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
|
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
|
$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
|
||||||
}
|
}
|
||||||
|
|
||||||
$identifier = $args['identifier'];
|
$identifier = $args['identifier'];
|
||||||
|
|
@ -31,50 +30,44 @@ debug_message("Query: $query") ;
|
||||||
$res = $db->query($query);
|
$res = $db->query($query);
|
||||||
|
|
||||||
if ($res===false) {
|
if ($res===false) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo __FILE__.','.__LINE__."<br />";
|
echo __FILE__.','.__LINE__."<br />";
|
||||||
echo "Query: $query<br />\n";
|
echo "Query: $query<br />\n";
|
||||||
die($db->errorInfo());
|
die($db->errorInfo());
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
||||||
}
|
}
|
||||||
} elseif (!$res->rowCount()) { // based on PHP manual, it might only work for some DBs
|
} elseif (!$res->rowCount()) { // based on PHP manual, it might only work for some DBs
|
||||||
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
if (!empty($errors)) {
|
if (!empty($errors)) {
|
||||||
oai_exit();
|
oai_exit();
|
||||||
}
|
}
|
||||||
|
|
||||||
$record = $res->fetch(PDO::FETCH_ASSOC);
|
$record = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
if ($record===false) {
|
if ($record===false) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo __FILE__.','.__LINE__."<br />";
|
echo __FILE__.','.__LINE__."<br />";
|
||||||
echo "Query: $query<br />\n";
|
echo "Query: $query<br />\n";
|
||||||
}
|
}
|
||||||
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
||||||
}
|
}
|
||||||
|
|
||||||
$identifier = $record[$SQL['identifier']];;
|
$identifier = $record[$SQL['identifier']];;
|
||||||
|
|
||||||
$datestamp = formatDatestamp($record[$SQL['datestamp']]);
|
$datestamp = formatDatestamp($record[$SQL['datestamp']]);
|
||||||
|
|
||||||
if (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] == 'true') &&
|
$status_deleted = (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] == 'true') &&
|
||||||
($deletedRecord == 'transient' || $deletedRecord == 'persistent')) {
|
($deletedRecord == 'transient' || $deletedRecord == 'persistent'));
|
||||||
$status_deleted = TRUE;
|
|
||||||
} else {
|
|
||||||
$status_deleted = FALSE;
|
|
||||||
}
|
|
||||||
|
|
||||||
$outputObj = new ANDS_Response_XML($args);
|
$outputObj = new ANDS_Response_XML($args);
|
||||||
$cur_record = $outputObj->create_record();
|
$cur_record = $outputObj->create_record();
|
||||||
$cur_header = $outputObj->create_header($identifier, $datestamp,$record[$SQL['set']],$cur_record);
|
$cur_header = $outputObj->create_header($identifier, $datestamp,$record[$SQL['set']],$cur_record);
|
||||||
// return the metadata record itself
|
// return the metadata record itself
|
||||||
if (!$status_deleted) {
|
if (!$status_deleted) {
|
||||||
include($inc_record); // where the metadata node is generated.
|
include($inc_record); // where the metadata node is generated.
|
||||||
create_metadata($outputObj, $cur_record, $identifier, $record[$SQL['set']], $db);
|
create_metadata($outputObj, $cur_record, $identifier, $record[$SQL['set']], $db);
|
||||||
} else {
|
} else {
|
||||||
$cur_header->setAttribute("status","deleted");
|
$cur_header->setAttribute("status","deleted");
|
||||||
}
|
}
|
||||||
?>
|
|
||||||
|
|
|
||||||
24
identify.php
24
identify.php
|
|
@ -10,23 +10,24 @@
|
||||||
|
|
||||||
// The response to Identify is fixed
|
// The response to Identify is fixed
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo "Here are some settings in raw format:\n";
|
echo "Here are some settings in raw format:\n";
|
||||||
print_r($identifyResponse);
|
print_r($identifyResponse);
|
||||||
echo 'MAXRECORDS ',MAXRECORDS, ', MAXIDS ', MAXIDS,"\n";
|
echo 'MAXRECORDS ',MAXRECORDS, ', MAXIDS ', MAXIDS,"\n";
|
||||||
echo 'Token is valid for ',TOKEN_VALID," seconds\n";
|
echo 'Token is valid for ',TOKEN_VALID," seconds\n";
|
||||||
echo 'Tokens have prefix: ',TOKEN_PREFIX,"\n";
|
echo 'Tokens have prefix: ',TOKEN_PREFIX,"\n";
|
||||||
echo 'XMLSCHEMA: ',XMLSCHEMA,"\n";
|
echo 'XMLSCHEMA: ',XMLSCHEMA,"\n";
|
||||||
echo "\n";
|
echo "\n";
|
||||||
}
|
}
|
||||||
|
|
||||||
$outputObj = new ANDS_Response_XML($args);
|
$outputObj = new ANDS_Response_XML($args);
|
||||||
foreach($identifyResponse as $key => $val) {
|
foreach($identifyResponse as $key => $val) {
|
||||||
$outputObj->add2_verbNode($key, $val);
|
$outputObj->add2_verbNode($key, $val);
|
||||||
}
|
}
|
||||||
|
|
||||||
if(isset($compression)) {
|
if(isset($compression)) {
|
||||||
foreach($compression as $val) {
|
foreach($compression as $val) {
|
||||||
$outputObj->add2_verbNode("compression", $val);
|
$outputObj->add2_verbNode("compression", $val);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
// A description MAY be included.
|
// A description MAY be included.
|
||||||
|
|
@ -132,4 +133,3 @@ if(strlen($output)>10) {
|
||||||
$des->appendXML($output);
|
$des->appendXML($output);
|
||||||
$outputObj->verbNode->appendChild($des);
|
$outputObj->verbNode->appendChild($des);
|
||||||
}
|
}
|
||||||
?>
|
|
||||||
|
|
|
||||||
|
|
@ -136,6 +136,3 @@ University of Adelaide
|
||||||
</p>
|
</p>
|
||||||
</body>
|
</body>
|
||||||
</html>
|
</html>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -18,32 +18,32 @@
|
||||||
*
|
*
|
||||||
*/
|
*/
|
||||||
function addMetedataFormat(&$outputObj,$key,$val) {
|
function addMetedataFormat(&$outputObj,$key,$val) {
|
||||||
$cmf = $outputObj->add2_verbNode("metadataFormat");
|
$cmf = $outputObj->add2_verbNode("metadataFormat");
|
||||||
$outputObj->addChild($cmf,'metadataPrefix',$key);
|
$outputObj->addChild($cmf,'metadataPrefix',$key);
|
||||||
$outputObj->addChild($cmf,'schema',$val['schema']);
|
$outputObj->addChild($cmf,'schema',$val['schema']);
|
||||||
$outputObj->addChild($cmf,'metadataNamespace',$val['metadataNamespace']);
|
$outputObj->addChild($cmf,'metadataNamespace',$val['metadataNamespace']);
|
||||||
}
|
}
|
||||||
|
|
||||||
if (isset($args['identifier'])) {
|
if (isset($args['identifier'])) {
|
||||||
$identifier = $args['identifier'];
|
$identifier = $args['identifier'];
|
||||||
$query = idFormatQuery($identifier);
|
$query = idFormatQuery($identifier);
|
||||||
$res = $db->query($query);
|
$res = $db->query($query);
|
||||||
if ($res==false) {
|
if ($res==false) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo __FILE__.','.__LINE__."<br />";
|
echo __FILE__.','.__LINE__."<br />";
|
||||||
echo "Query: $query<br />\n";
|
echo "Query: $query<br />\n";
|
||||||
die($db->errorInfo());
|
die($db->errorInfo());
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('idDoesNotExist','', $identifier);
|
$errors[] = oai_error('idDoesNotExist','', $identifier);
|
||||||
}
|
}
|
||||||
} else {
|
} else {
|
||||||
$record = $res->fetch();
|
$record = $res->fetch();
|
||||||
if($record===false) {
|
if($record===false) {
|
||||||
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
$errors[] = oai_error('idDoesNotExist', '', $identifier);
|
||||||
} else {
|
} else {
|
||||||
$mf = explode(",",$record[$SQL['metadataPrefix']]);
|
$mf = explode(",",$record[$SQL['metadataPrefix']]);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
//break and clean up on error
|
//break and clean up on error
|
||||||
|
|
@ -51,17 +51,15 @@ if (!empty($errors)) oai_exit();
|
||||||
|
|
||||||
$outputObj = new ANDS_Response_XML($args);
|
$outputObj = new ANDS_Response_XML($args);
|
||||||
if (isset($mf)) {
|
if (isset($mf)) {
|
||||||
foreach($mf as $key) {
|
foreach($mf as $key) {
|
||||||
$val = $METADATAFORMATS[$key];
|
$val = $METADATAFORMATS[$key];
|
||||||
addMetedataFormat($outputObj,$key, $val);
|
addMetedataFormat($outputObj,$key, $val);
|
||||||
}
|
}
|
||||||
} elseif (is_array($METADATAFORMATS)) {
|
} elseif (is_array($METADATAFORMATS)) {
|
||||||
foreach($METADATAFORMATS as $key=>$val) {
|
foreach($METADATAFORMATS as $key=>$val) {
|
||||||
addMetedataFormat($outputObj,$key, $val);
|
addMetedataFormat($outputObj,$key, $val);
|
||||||
}
|
}
|
||||||
|
} else { // a very unlikely event
|
||||||
|
$errors[] = oai_error('noMetadataFormats');
|
||||||
|
oai_exit();
|
||||||
}
|
}
|
||||||
else { // a very unlikely event
|
|
||||||
$errors[] = oai_error('noMetadataFormats');
|
|
||||||
oai_exit();
|
|
||||||
}
|
|
||||||
?>
|
|
||||||
|
|
|
||||||
218
listrecords.php
218
listrecords.php
|
|
@ -13,116 +13,117 @@ debug_message("\nI am debuging". __FILE__) ;
|
||||||
|
|
||||||
// Resume previous session?
|
// Resume previous session?
|
||||||
if (isset($args['resumptionToken'])) {
|
if (isset($args['resumptionToken'])) {
|
||||||
if (!file_exists(TOKEN_PREFIX.$args['resumptionToken'])) {
|
if (!file_exists(TOKEN_PREFIX.$args['resumptionToken'])) {
|
||||||
$errors[] = oai_error('badResumptionToken', '', $args['resumptionToken']);
|
$errors[] = oai_error('badResumptionToken', '', $args['resumptionToken']);
|
||||||
} else {
|
} else {
|
||||||
$readings = readResumToken(TOKEN_PREFIX.$args['resumptionToken']);
|
$readings = readResumToken(TOKEN_PREFIX.$args['resumptionToken']);
|
||||||
if ($readings == false) {
|
if ($readings == false) {
|
||||||
$errors[] = oai_error('badResumptionToken', '', $args['resumptionToken']);
|
$errors[] = oai_error('badResumptionToken', '', $args['resumptionToken']);
|
||||||
} else {
|
} else {
|
||||||
debug_var_dump('readings',$readings);
|
debug_var_dump('readings',$readings);
|
||||||
list($deliveredrecords, $extquery, $metadataPrefix) = $readings;
|
list($deliveredrecords, $extquery, $metadataPrefix) = $readings;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
} else { // no, we start a new session
|
} else { // no, we start a new session
|
||||||
$deliveredrecords = 0;
|
$deliveredrecords = 0;
|
||||||
$extquery = '';
|
$extquery = '';
|
||||||
|
|
||||||
$metadataPrefix = $args['metadataPrefix'];
|
$metadataPrefix = $args['metadataPrefix'];
|
||||||
|
|
||||||
if (isset($args['from'])) {
|
if (isset($args['from'])) {
|
||||||
$from = checkDateFormat($args['from']);
|
$from = checkDateFormat($args['from']);
|
||||||
$extquery .= fromQuery($from);
|
$extquery .= fromQuery($from);
|
||||||
}
|
}
|
||||||
|
|
||||||
if (isset($args['until'])) {
|
if (isset($args['until'])) {
|
||||||
$until = checkDateFormat($args['until']);
|
$until = checkDateFormat($args['until']);
|
||||||
$extquery .= untilQuery($until);
|
$extquery .= untilQuery($until);
|
||||||
}
|
}
|
||||||
|
|
||||||
if (isset($args['set'])) {
|
if (isset($args['set'])) {
|
||||||
if (is_array($SETS)) {
|
if (is_array($SETS)) {
|
||||||
$extquery .= setQuery($args['set']);
|
$extquery .= setQuery($args['set']);
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('noSetHierarchy');
|
$errors[] = oai_error('noSetHierarchy');
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
if (!empty($errors)) {
|
if (!empty($errors)) {
|
||||||
oai_exit();
|
oai_exit();
|
||||||
}
|
}
|
||||||
|
|
||||||
// Load the handler
|
// Load the handler
|
||||||
if (is_array($METADATAFORMATS[$metadataPrefix])
|
if (is_array($METADATAFORMATS[$metadataPrefix]) && isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
|
||||||
&& isset($METADATAFORMATS[$metadataPrefix]['myhandler'])) {
|
$inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
|
||||||
$inc_record = $METADATAFORMATS[$metadataPrefix]['myhandler'];
|
include($inc_record);
|
||||||
include($inc_record);
|
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
|
$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
|
||||||
}
|
}
|
||||||
|
|
||||||
if (!empty($errors)) {
|
if (!empty($errors)) {
|
||||||
oai_exit();
|
oai_exit();
|
||||||
}
|
}
|
||||||
|
|
||||||
if (empty($errors)) {
|
if (empty($errors)) {
|
||||||
$query = selectallQuery($metadataPrefix) . $extquery;
|
$query = selectallQuery($metadataPrefix) . $extquery;
|
||||||
debug_message("Query: $query") ;
|
debug_message("Query: $query") ;
|
||||||
|
|
||||||
$res = $db->prepare($query, array(PDO::ATTR_CURSOR => PDO::CURSOR_SCROLL));
|
$res = $db->prepare($query, array(PDO::ATTR_CURSOR => PDO::CURSOR_SCROLL));
|
||||||
$r = $res->execute();
|
$r = $res->execute();
|
||||||
if ($r===false) {
|
if (($r===false) ) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if ( (SHOW_QUERY_ERROR)) {
|
||||||
echo __FILE__.','.__LINE__."<br />";
|
echo __FILE__.','.__LINE__."<br />";
|
||||||
echo "Query: $query<br />\n";
|
echo "Query: $query<br />\n";
|
||||||
print_r($db->errorInfo());
|
print_r($db->errorInfo());
|
||||||
exit();
|
exit();
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('noRecordsMatch');
|
$errors[] = oai_error('noRecordsMatch');
|
||||||
}
|
}
|
||||||
} else {
|
} else {
|
||||||
$r = $res->setFetchMode(PDO::FETCH_ASSOC);
|
$r = $res->setFetchMode(PDO::FETCH_ASSOC);
|
||||||
if ($r===false) {
|
if ($r===false) {
|
||||||
exit("FetchMode is not supported");
|
exit("FetchMode is not supported");
|
||||||
}
|
}
|
||||||
$num_rows = rowCount($metadataPrefix, $extquery, $db);
|
$num_rows = rowCount($metadataPrefix, $extquery, $db);
|
||||||
if ($num_rows==0) {
|
if ($num_rows==0) {
|
||||||
echo "Cannot find records: $query\n";
|
if (SHOW_QUERY_ERROR) {
|
||||||
$errors[] = oai_error('noRecordsMatch');
|
echo "Cannot find records: $query\n";
|
||||||
}
|
}
|
||||||
}
|
$errors[] = oai_error('noRecordsMatch');
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
if (!empty($errors)) {
|
if (!empty($errors)) {
|
||||||
oai_exit();
|
oai_exit();
|
||||||
}
|
}
|
||||||
|
|
||||||
// Will we need a new ResumptionToken?
|
// Will we need a new ResumptionToken?
|
||||||
if($args['verb']=='ListRecords') {
|
if($args['verb']=='ListRecords') {
|
||||||
$maxItems = MAXRECORDS;
|
$maxItems = MAXRECORDS;
|
||||||
} elseif($args['verb']=='ListIdentifiers') {
|
} elseif($args['verb']=='ListIdentifiers') {
|
||||||
$maxItems = MAXIDS;
|
$maxItems = MAXIDS;
|
||||||
} else {
|
} else {
|
||||||
exit("Check ".__FILE__." ".__LINE__.", there is something wrong.");
|
exit("Check ".__FILE__." ".__LINE__.", there is something wrong.");
|
||||||
}
|
}
|
||||||
$maxrec = min($num_rows - $deliveredrecords, $maxItems);
|
$maxrec = min($num_rows - $deliveredrecords, $maxItems);
|
||||||
|
|
||||||
if ($num_rows - $deliveredrecords > $maxItems) {
|
if ($num_rows - $deliveredrecords > $maxItems) {
|
||||||
$cursor = (int)$deliveredrecords + $maxItems;
|
$cursor = (int)$deliveredrecords + $maxItems;
|
||||||
$restoken = createResumToken($cursor, $extquery, $metadataPrefix);
|
$restoken = createResumToken($cursor, $extquery, $metadataPrefix);
|
||||||
$expirationdatetime = gmstrftime('%Y-%m-%dT%TZ', time()+TOKEN_VALID);
|
$expirationdatetime = gmstrftime('%Y-%m-%dT%TZ', time()+TOKEN_VALID);
|
||||||
}
|
}
|
||||||
// Last delivery, return empty ResumptionToken
|
// Last delivery, return empty ResumptionToken
|
||||||
elseif (isset($args['resumptionToken'])) {
|
elseif (isset($args['resumptionToken'])) {
|
||||||
$restoken = $args['resumptionToken']; // just used as an indicator
|
$restoken = $args['resumptionToken']; // just used as an indicator
|
||||||
unset($expirationdatetime);
|
unset($expirationdatetime);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
if (isset($args['resumptionToken'])) {
|
if (isset($args['resumptionToken'])) {
|
||||||
debug_message("Try to resume because a resumptionToken supplied.") ;
|
debug_message("Try to resume because a resumptionToken supplied.") ;
|
||||||
$record = $res->fetch(PDO::FETCH_ASSOC, PDO::FETCH_ORI_ABS, $deliveredrecords);
|
$record = $res->fetch(PDO::FETCH_ASSOC, PDO::FETCH_ORI_ABS, $deliveredrecords);
|
||||||
}
|
}
|
||||||
// Record counter
|
// Record counter
|
||||||
$countrec = 0;
|
$countrec = 0;
|
||||||
|
|
@ -130,53 +131,48 @@ $countrec = 0;
|
||||||
// Publish a batch to $maxrec number of records
|
// Publish a batch to $maxrec number of records
|
||||||
$outputObj = new ANDS_Response_XML($args);
|
$outputObj = new ANDS_Response_XML($args);
|
||||||
while ($countrec++ < $maxrec) {
|
while ($countrec++ < $maxrec) {
|
||||||
$record = $res->fetch(PDO::FETCH_ASSOC);
|
$record = $res->fetch(PDO::FETCH_ASSOC);
|
||||||
if ($record===false) {
|
if ($record===false) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo __FILE__.",". __LINE__."<br />";
|
echo __FILE__.",". __LINE__."<br />";
|
||||||
print_r($db->errorInfo());
|
print_r($db->errorInfo());
|
||||||
exit();
|
exit();
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
$identifier = $oaiprefix.$record[$SQL['identifier']];
|
$identifier = $oaiprefix.$record[$SQL['identifier']];
|
||||||
$datestamp = formatDatestamp($record[$SQL['datestamp']]);
|
$datestamp = formatDatestamp($record[$SQL['datestamp']]);
|
||||||
$setspec = $record[$SQL['set']];
|
$setspec = $record[$SQL['set']];
|
||||||
|
|
||||||
// debug_var_dump('record', $record);
|
// debug_var_dump('record', $record);
|
||||||
if (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] === true) &&
|
$status_deleted = (isset($record[$SQL['deleted']]) && ($record[$SQL['deleted']] === true) &&
|
||||||
($deletedRecord == 'transient' || $deletedRecord == 'persistent')) {
|
($deletedRecord == 'transient' || $deletedRecord == 'persistent'));
|
||||||
$status_deleted = TRUE;
|
|
||||||
} else {
|
//debug_var_dump('status_deleted', $status_deleted);
|
||||||
$status_deleted = FALSE;
|
if($args['verb']=='ListRecords') {
|
||||||
}
|
$cur_record = $outputObj->create_record();
|
||||||
|
$cur_header = $outputObj->create_header($identifier, $datestamp,$setspec,$cur_record);
|
||||||
//debug_var_dump('status_deleted', $status_deleted);
|
// return the metadata record itself
|
||||||
if($args['verb']=='ListRecords') {
|
if (!$status_deleted) {
|
||||||
$cur_record = $outputObj->create_record();
|
debug_var_dump('inc_record',$inc_record);
|
||||||
$cur_header = $outputObj->create_header($identifier, $datestamp,$setspec,$cur_record);
|
create_metadata($outputObj, $cur_record, $identifier, $setspec, $db);
|
||||||
// return the metadata record itself
|
}
|
||||||
if (!$status_deleted) {
|
} else { // for ListIdentifiers, only identifiers will be returned.
|
||||||
debug_var_dump('inc_record',$inc_record);
|
$cur_header = $outputObj->create_header($identifier, $datestamp,$setspec);
|
||||||
create_metadata($outputObj, $cur_record, $identifier, $setspec, $db);
|
}
|
||||||
}
|
if ($status_deleted) {
|
||||||
} else { // for ListIdentifiers, only identifiers will be returned.
|
$cur_header->setAttribute("status","deleted");
|
||||||
$cur_header = $outputObj->create_header($identifier, $datestamp,$setspec);
|
}
|
||||||
}
|
|
||||||
if ($status_deleted) {
|
|
||||||
$cur_header->setAttribute("status","deleted");
|
|
||||||
}
|
|
||||||
}
|
}
|
||||||
|
|
||||||
// ResumptionToken
|
// ResumptionToken
|
||||||
if (isset($restoken)) {
|
if (isset($restoken)) {
|
||||||
if(isset($expirationdatetime)) {
|
if(isset($expirationdatetime)) {
|
||||||
$outputObj->create_resumpToken($restoken,$expirationdatetime,$num_rows,$cursor);
|
$outputObj->create_resumpToken($restoken,$expirationdatetime,$num_rows,$cursor);
|
||||||
} else {
|
} else {
|
||||||
$outputObj->create_resumpToken('',null,$num_rows,$deliveredrecords);
|
$outputObj->create_resumpToken('',null,$num_rows,$deliveredrecords);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
// end ListRecords
|
// end ListRecords
|
||||||
if (SHOW_QUERY_ERROR) {echo "Debug listrecord.php reached to the end.\n\n";}
|
if (SHOW_QUERY_ERROR) {echo "Debug listrecord.php reached to the end.\n\n";}
|
||||||
?>
|
|
||||||
|
|
|
||||||
40
listsets.php
40
listsets.php
|
|
@ -1,30 +1,28 @@
|
||||||
<?php
|
<?php
|
||||||
/**
|
/**
|
||||||
* \file
|
* \file
|
||||||
* \brief Response to Verb ListSets
|
* \brief Response to Verb ListSets
|
||||||
*
|
*
|
||||||
* Lists what sets are available to records in the system.
|
* Lists what sets are available to records in the system.
|
||||||
*/
|
*/
|
||||||
|
|
||||||
// Here the size of sets is small, no resumptionToken is taken care.
|
// Here the size of sets is small, no resumptionToken is taken care.
|
||||||
if (is_array($SETS)) {
|
if (is_array($SETS)) {
|
||||||
$outputObj = new ANDS_Response_XML($args);
|
$outputObj = new ANDS_Response_XML($args);
|
||||||
foreach($SETS as $set) {
|
foreach($SETS as $set) {
|
||||||
$setNode = $outputObj->add2_verbNode("set");
|
$setNode = $outputObj->add2_verbNode("set");
|
||||||
foreach($set as $key => $val) {
|
foreach($set as $key => $val) {
|
||||||
if($key=='setDescription') {
|
if($key=='setDescription') {
|
||||||
$desNode = $outputObj->addChild($setNode,$key);
|
$desNode = $outputObj->addChild($setNode,$key);
|
||||||
$des = $outputObj->doc->createDocumentFragment();
|
$des = $outputObj->doc->createDocumentFragment();
|
||||||
$des->appendXML($val);
|
$des->appendXML($val);
|
||||||
$desNode->appendChild($des);
|
$desNode->appendChild($des);
|
||||||
} else {
|
} else {
|
||||||
$outputObj->addChild($setNode,$key,$val);
|
$outputObj->addChild($setNode,$key,$val);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
} else {
|
} else {
|
||||||
$errors[] = oai_error('noSetHierarchy');
|
$errors[] = oai_error('noSetHierarchy');
|
||||||
oai_exit();
|
oai_exit();
|
||||||
}
|
}
|
||||||
|
|
||||||
?>
|
|
||||||
|
|
|
||||||
8
oai2.php
8
oai2.php
|
|
@ -152,7 +152,9 @@ if (isset($args['verb'])) {
|
||||||
$errors[] = oai_error('noVerb');
|
$errors[] = oai_error('noVerb');
|
||||||
}
|
}
|
||||||
|
|
||||||
if (!empty($errors)) { oai_exit(); }
|
if (!empty($errors)) {
|
||||||
|
oai_exit();
|
||||||
|
}
|
||||||
|
|
||||||
if ($compress) {
|
if ($compress) {
|
||||||
ob_start('ob_gzhandler');
|
ob_start('ob_gzhandler');
|
||||||
|
|
@ -160,7 +162,7 @@ if ($compress) {
|
||||||
|
|
||||||
header(CONTENT_TYPE);
|
header(CONTENT_TYPE);
|
||||||
|
|
||||||
if(isset($outputObj)) {
|
if (isset($outputObj)) {
|
||||||
$outputObj->display();
|
$outputObj->display();
|
||||||
} else {
|
} else {
|
||||||
exit("There is a bug in codes");
|
exit("There is a bug in codes");
|
||||||
|
|
@ -169,5 +171,3 @@ if(isset($outputObj)) {
|
||||||
if ($compress) {
|
if ($compress) {
|
||||||
ob_end_flush();
|
ob_end_flush();
|
||||||
}
|
}
|
||||||
|
|
||||||
?>
|
|
||||||
|
|
|
||||||
|
|
@ -119,12 +119,12 @@ $deletedRecord = $identifyResponse["deletedRecord"]; // a shorthand for checking
|
||||||
//granularity is days
|
//granularity is days
|
||||||
//$granularity = 'YYYY-MM-DD';
|
//$granularity = 'YYYY-MM-DD';
|
||||||
// granularity is seconds
|
// granularity is seconds
|
||||||
$identifyResponse["granularity"] = 'YYYY-MM-DD';
|
$identifyResponse["granularity"] = 'YYYY-MM-DDThh:mm:ssZ';
|
||||||
|
|
||||||
// this is appended if your granularity is seconds.
|
// this is appended if your granularity is seconds.
|
||||||
// do not change
|
// do not change
|
||||||
if (strcmp($identifyResponse["granularity"],'YYYY-MM-DDThh:mm:ssZ')==0) {
|
if (strcmp($identifyResponse["granularity"],'YYYY-MM-DDThh:mm:ssZ')==0) {
|
||||||
$identifyResponse["earliestDatestamp"] = $identifyResponse["earliestDatestamp"].'T00:00:00Z';
|
// $identifyResponse["earliestDatestamp"] = $identifyResponse["earliestDatestamp"].'T00:00:00Z';
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Compression methods supported. Optional (multiple). Default: null.
|
/** Compression methods supported. Optional (multiple). Default: null.
|
||||||
|
|
|
||||||
365
oaidp-util.php
365
oaidp-util.php
|
|
@ -13,10 +13,10 @@
|
||||||
* \see SHOW_QUERY_ERROR in oaidp-config.php
|
* \see SHOW_QUERY_ERROR in oaidp-config.php
|
||||||
*/
|
*/
|
||||||
function debug_var_dump($var_name, $var) {
|
function debug_var_dump($var_name, $var) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo "Dumping \${$var_name}: \n";
|
echo "Dumping \${$var_name}: \n";
|
||||||
var_dump($var)."\n";
|
var_dump($var)."\n";
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Prints human-readable information about a variable for debugging,
|
/** Prints human-readable information about a variable for debugging,
|
||||||
|
|
@ -26,10 +26,10 @@ function debug_var_dump($var_name, $var) {
|
||||||
* \see SHOW_QUERY_ERROR in oaidp-config.php
|
* \see SHOW_QUERY_ERROR in oaidp-config.php
|
||||||
*/
|
*/
|
||||||
function debug_print_r($var_name, $var) {
|
function debug_print_r($var_name, $var) {
|
||||||
if (SHOW_QUERY_ERROR) {
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo "Printing \${$var_name}: \n";
|
echo "Printing \${$var_name}: \n";
|
||||||
print_r($var)."\n";
|
print_r($var)."\n";
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Prints a message for debugging,
|
/** Prints a message for debugging,
|
||||||
|
|
@ -39,8 +39,9 @@ function debug_print_r($var_name, $var) {
|
||||||
* \see SHOW_QUERY_ERROR in oaidp-config.php
|
* \see SHOW_QUERY_ERROR in oaidp-config.php
|
||||||
*/
|
*/
|
||||||
function debug_message($msg) {
|
function debug_message($msg) {
|
||||||
if (!SHOW_QUERY_ERROR) return;
|
if (SHOW_QUERY_ERROR) {
|
||||||
echo $msg,"\n";
|
echo $msg,"\n";
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Check if provided correct arguments for a request.
|
/** Check if provided correct arguments for a request.
|
||||||
|
|
@ -53,63 +54,63 @@ function debug_message($msg) {
|
||||||
* is needed.
|
* is needed.
|
||||||
*/
|
*/
|
||||||
function checkArgs($args, $checkList) {
|
function checkArgs($args, $checkList) {
|
||||||
// global $errors, $TOKEN_VALID, $METADATAFORMATS;
|
// global $errors, $TOKEN_VALID, $METADATAFORMATS;
|
||||||
global $errors, $METADATAFORMATS;
|
global $errors, $METADATAFORMATS;
|
||||||
// $verb = $args['verb'];
|
// $verb = $args['verb'];
|
||||||
unset($args["verb"]);
|
unset($args["verb"]);
|
||||||
|
|
||||||
debug_print_r('checkList',$checkList);
|
debug_print_r('checkList',$checkList);
|
||||||
debug_print_r('args',$args);
|
debug_print_r('args',$args);
|
||||||
|
|
||||||
// "verb" has been checked before, no further check is needed
|
|
||||||
if(isset($checkList['required'])) {
|
|
||||||
for($i = 0; $i < count($checkList["required"]); $i++) {
|
|
||||||
debug_message("Checking: par$i: ". $checkList['required'][$i] . " in ");
|
|
||||||
debug_var_dump("isset(\$args[\$checkList['required'][\$i]])",isset($args[$checkList['required'][$i]]));
|
|
||||||
// echo "key exists". array_key_exists($checkList["required"][$i],$args)."\n";
|
|
||||||
if(isset($args[$checkList['required'][$i]])==false) {
|
|
||||||
// echo "caught\n";
|
|
||||||
$errors[] = oai_error('missingArgument', $checkList["required"][$i]);
|
|
||||||
} else {
|
|
||||||
// if metadataPrefix is set, it is in required section
|
|
||||||
if(isset($args['metadataPrefix'])) {
|
|
||||||
$metadataPrefix = $args['metadataPrefix'];
|
|
||||||
// Check if the format is supported, it has enough infor (an array), last if a handle has been defined.
|
|
||||||
if (!array_key_exists ($metadataPrefix, $METADATAFORMATS) || !(is_array($METADATAFORMATS[$metadataPrefix])
|
|
||||||
|| !isset($METADATAFORMATS[$metadataPrefix]['myhandler']))) {
|
|
||||||
$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
unset($args[$checkList["required"][$i]]);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
debug_message('Before return');
|
|
||||||
debug_print_r('errors',$errors);
|
|
||||||
if (!empty($errors)) return;
|
|
||||||
|
|
||||||
// check to see if there is unwanted
|
// "verb" has been checked before, no further check is needed
|
||||||
foreach($args as $key => $val) {
|
if(isset($checkList['required'])) {
|
||||||
debug_message("checkArgs: $key");
|
for($i = 0; $i < count($checkList["required"]); $i++) {
|
||||||
if(!in_array($key, $checkList["ops"])) {
|
debug_message("Checking: par$i: ". $checkList['required'][$i] . " in ");
|
||||||
debug_message("Wrong\n".print_r($checkList['ops'],true));
|
debug_var_dump("isset(\$args[\$checkList['required'][\$i]])",isset($args[$checkList['required'][$i]]));
|
||||||
$errors[] = oai_error('badArgument', $key, $val);
|
// echo "key exists". array_key_exists($checkList["required"][$i],$args)."\n";
|
||||||
}
|
if(isset($args[$checkList['required'][$i]])==false) {
|
||||||
switch ($key) {
|
// echo "caught\n";
|
||||||
case 'from':
|
$errors[] = oai_error('missingArgument', $checkList["required"][$i]);
|
||||||
case 'until':
|
} else {
|
||||||
if(!checkDateFormat($val)) {
|
// if metadataPrefix is set, it is in required section
|
||||||
$errors[] = oai_error('badGranularity', $key, $val);
|
if(isset($args['metadataPrefix'])) {
|
||||||
}
|
$metadataPrefix = $args['metadataPrefix'];
|
||||||
break;
|
// Check if the format is supported, it has enough infor (an array), last if a handle has been defined.
|
||||||
|
if (!array_key_exists ($metadataPrefix, $METADATAFORMATS) || !(is_array($METADATAFORMATS[$metadataPrefix])
|
||||||
case 'resumptionToken':
|
|| !isset($METADATAFORMATS[$metadataPrefix]['myhandler']))) {
|
||||||
// only check for expairation
|
$errors[] = oai_error('cannotDisseminateFormat', 'metadataPrefix', $metadataPrefix);
|
||||||
if((int)$val+TOKEN_VALID < time())
|
}
|
||||||
$errors[] = oai_error('badResumptionToken');
|
}
|
||||||
break;
|
unset($args[$checkList["required"][$i]]);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
}
|
||||||
|
debug_message('Before return');
|
||||||
|
debug_print_r('errors',$errors);
|
||||||
|
if (!empty($errors)) return;
|
||||||
|
|
||||||
|
// check to see if there is unwanted
|
||||||
|
foreach($args as $key => $val) {
|
||||||
|
debug_message("checkArgs: $key");
|
||||||
|
if(!in_array($key, $checkList["ops"])) {
|
||||||
|
debug_message("Wrong\n".print_r($checkList['ops'],true));
|
||||||
|
$errors[] = oai_error('badArgument', $key, $val);
|
||||||
|
}
|
||||||
|
switch ($key) {
|
||||||
|
case 'from':
|
||||||
|
case 'until':
|
||||||
|
if(!checkDateFormat($val)) {
|
||||||
|
$errors[] = oai_error('badGranularity', $key, $val);
|
||||||
|
}
|
||||||
|
break;
|
||||||
|
|
||||||
|
case 'resumptionToken':
|
||||||
|
// only check for expairation
|
||||||
|
if((int)$val+TOKEN_VALID < time())
|
||||||
|
$errors[] = oai_error('badResumptionToken');
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Validates an identifier. The pattern is: '/^[-a-z\.0-9]+$/i' which means
|
/** Validates an identifier. The pattern is: '/^[-a-z\.0-9]+$/i' which means
|
||||||
|
|
@ -117,9 +118,8 @@ function checkArgs($args, $checkList) {
|
||||||
* Used only by function <B>oai_error</B> code idDoesNotExist.
|
* Used only by function <B>oai_error</B> code idDoesNotExist.
|
||||||
* \param $url Type: string
|
* \param $url Type: string
|
||||||
*/
|
*/
|
||||||
function is_valid_uri($url)
|
function is_valid_uri($url) {
|
||||||
{
|
return((bool)preg_match('/^[-a-z\.0-9]+$/i', $url));
|
||||||
return((bool)preg_match('/^[-a-z\.0-9]+$/i', $url));
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Validates attributes come with the query.
|
/** Validates attributes come with the query.
|
||||||
|
|
@ -127,72 +127,69 @@ function is_valid_uri($url)
|
||||||
* Here there are few more match patterns than is_valid_uri(): ':_'.
|
* Here there are few more match patterns than is_valid_uri(): ':_'.
|
||||||
* \param $attrb Type: string
|
* \param $attrb Type: string
|
||||||
*/
|
*/
|
||||||
function is_valid_attrb($attrb) {
|
function is_valid_attrb($attrb) {
|
||||||
return preg_match("/^[_a-zA-Z0-9\-\:\.]+$/",$attrb);
|
return preg_match("/^[_a-zA-Z0-9\-\:\.]+$/",$attrb);
|
||||||
}
|
}
|
||||||
|
|
||||||
/** All datestamps used in this system are GMT even
|
/** All datestamps used in this system are GMT even
|
||||||
* return value from database has no TZ information
|
* return value from database has no TZ information
|
||||||
*/
|
*/
|
||||||
function formatDatestamp($datestamp)
|
function formatDatestamp($datestamp) {
|
||||||
{
|
return date("Y-m-d\TH:i:s\Z",strtotime($datestamp));
|
||||||
return date("Y-m-d\TH:i:s\Z",strtotime($datestamp));
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/** The database uses datastamp without time-zone information.
|
/** The database uses datastamp without time-zone information.
|
||||||
* It needs to clean all time-zone informaion from time string and reformat it
|
* It needs to clean all time-zone informaion from time string and reformat it
|
||||||
*/
|
*/
|
||||||
function checkDateFormat($date) {
|
function checkDateFormat($date) {
|
||||||
$date = str_replace(array("T","Z")," ",$date);
|
$date = str_replace(array("T","Z")," ",$date);
|
||||||
$time_val = strtotime($date);
|
$time_val = strtotime($date);
|
||||||
if (SHOW_QUERY_ERROR) { echo "timeval: $time_val\n"; }
|
if (SHOW_QUERY_ERROR) { echo "timeval: $time_val\n"; }
|
||||||
if(!$time_val) return false;
|
if(!$time_val) return false;
|
||||||
if(strstr($date,":")) {
|
if(strstr($date,":")) {
|
||||||
return date("Y-m-d H:i:s",$time_val);
|
return date("Y-m-d H:i:s",$time_val);
|
||||||
} else {
|
} else {
|
||||||
return date("Y-m-d",$time_val);
|
return date("Y-m-d",$time_val);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Retrieve all defined 'setSpec' from configuraiton of $SETS.
|
/** Retrieve all defined 'setSpec' from configuraiton of $SETS.
|
||||||
* It is used by ANDS_TPA::create_obj_node();
|
* It is used by ANDS_TPA::create_obj_node();
|
||||||
*/
|
*/
|
||||||
function prepare_set_names() {
|
function prepare_set_names() {
|
||||||
global $SETS;
|
global $SETS;
|
||||||
$n = count($SETS);
|
$n = count($SETS);
|
||||||
$a = array_fill(0,$n,'');
|
$a = array_fill(0,$n,'');
|
||||||
for ($i = 0; $i <$n; $i++) {
|
for ($i = 0; $i <$n; $i++) {
|
||||||
$a[$i] = $SETS[$i]['setSpec'];
|
$a[$i] = $SETS[$i]['setSpec'];
|
||||||
}
|
}
|
||||||
return $a;
|
return $a;
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Finish a request when there is an error: send back errors. */
|
/** Finish a request when there is an error: send back errors. */
|
||||||
function oai_exit()
|
function oai_exit() {
|
||||||
{
|
|
||||||
// global $CONTENT_TYPE;
|
|
||||||
header(CONTENT_TYPE);
|
|
||||||
global $args,$errors,$compress;
|
|
||||||
$e = new ANDS_Error_XML($args,$errors);
|
|
||||||
if ($compress) {
|
|
||||||
ob_start('ob_gzhandler');
|
|
||||||
}
|
|
||||||
|
|
||||||
$e->display();
|
|
||||||
|
|
||||||
if ($compress) {
|
// global $CONTENT_TYPE;
|
||||||
ob_end_flush();
|
header(CONTENT_TYPE);
|
||||||
}
|
global $args,$errors,$compress;
|
||||||
|
$e = new ANDS_Error_XML($args,$errors);
|
||||||
exit();
|
if ($compress) {
|
||||||
|
ob_start('ob_gzhandler');
|
||||||
|
}
|
||||||
|
|
||||||
|
$e->display();
|
||||||
|
|
||||||
|
if ($compress) {
|
||||||
|
ob_end_flush();
|
||||||
|
}
|
||||||
|
exit();
|
||||||
}
|
}
|
||||||
|
|
||||||
// ResumToken section
|
// ResumToken section
|
||||||
/** Generate a string based on the current Unix timestamp in microseconds for creating resumToken file name. */
|
/** Generate a string based on the current Unix timestamp in microseconds for creating resumToken file name. */
|
||||||
function get_token()
|
function get_token() {
|
||||||
{
|
list($usec, $sec) = explode(" ", microtime());
|
||||||
list($usec, $sec) = explode(" ", microtime());
|
return ((int)($usec*1000) + (int)($sec*1000));
|
||||||
return ((int)($usec*1000) + (int)($sec*1000));
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Create a token file.
|
/** Create a token file.
|
||||||
|
|
@ -200,30 +197,30 @@ function get_token()
|
||||||
* Called by listrecords.php.
|
* Called by listrecords.php.
|
||||||
*/
|
*/
|
||||||
function createResumToken($cursor, $extquery, $metadataPrefix) {
|
function createResumToken($cursor, $extquery, $metadataPrefix) {
|
||||||
$token = get_token();
|
$token = get_token();
|
||||||
$fp = fopen (TOKEN_PREFIX.$token, 'w');
|
$fp = fopen (TOKEN_PREFIX.$token, 'w');
|
||||||
if($fp==false) {
|
if($fp==false) {
|
||||||
exit("Cannot write. Writer permission needs to be changed.");
|
exit("Cannot write. Writer permission needs to be changed.");
|
||||||
}
|
}
|
||||||
fputs($fp, "$cursor#");
|
fputs($fp, "$cursor#");
|
||||||
fputs($fp, "$extquery#");
|
fputs($fp, "$extquery#");
|
||||||
fputs($fp, "$metadataPrefix#");
|
fputs($fp, "$metadataPrefix#");
|
||||||
fclose($fp);
|
fclose($fp);
|
||||||
return $token;
|
return $token;
|
||||||
}
|
}
|
||||||
|
|
||||||
/** Read a saved ResumToken */
|
/** Read a saved ResumToken */
|
||||||
function readResumToken($resumptionToken) {
|
function readResumToken($resumptionToken) {
|
||||||
$rtVal = false;
|
$rtVal = false;
|
||||||
$fp = fopen($resumptionToken, 'r');
|
$fp = fopen($resumptionToken, 'r');
|
||||||
if ($fp!=false) {
|
if ($fp!=false) {
|
||||||
$filetext = fgets($fp, 255);
|
$filetext = fgets($fp, 255);
|
||||||
$textparts = explode('#', $filetext);
|
$textparts = explode('#', $filetext);
|
||||||
fclose($fp);
|
fclose($fp);
|
||||||
unlink ($resumptionToken);
|
unlink ($resumptionToken);
|
||||||
$rtVal = array((int)$textparts[0], $textparts[1], $textparts[2]);
|
$rtVal = array((int)$textparts[0], $textparts[1], $textparts[2]);
|
||||||
}
|
}
|
||||||
return $rtVal;
|
return $rtVal;
|
||||||
}
|
}
|
||||||
|
|
||||||
// Here are a couple of queries which might need to be adjusted to
|
// Here are a couple of queries which might need to be adjusted to
|
||||||
|
|
@ -235,86 +232,80 @@ function readResumToken($resumptionToken) {
|
||||||
* the useless condition id_column = id_column is just there to ease
|
* the useless condition id_column = id_column is just there to ease
|
||||||
* further extensions to the query, please leave it as it is.
|
* further extensions to the query, please leave it as it is.
|
||||||
*/
|
*/
|
||||||
function selectallQuery ($metadPrefix = "rif", $id = '')
|
function selectallQuery($metadPrefix = "rif", $id = ''){
|
||||||
{
|
global $SQL;
|
||||||
global $SQL;
|
$query = "SELECT * FROM ".$SQL['table'] . " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
|
||||||
$query = "SELECT * FROM ".$SQL['table'] . " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
|
if ($id != '') {
|
||||||
if ($id != '') {
|
$query .= " AND ".$SQL['identifier']." ='$id'";
|
||||||
$query .= " AND ".$SQL['identifier']." ='$id'";
|
}
|
||||||
}
|
return $query;
|
||||||
return $query;
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/** this function will return metadataFormat of a record */
|
/** this function will return metadataFormat of a record */
|
||||||
function idFormatQuery($id)
|
function idFormatQuery($id) {
|
||||||
{
|
global $SQL;
|
||||||
global $SQL;
|
return 'select '.$SQL['metadataPrefix'].' FROM '.$SQL['table']. " WHERE ".$SQL['identifier']." = '".$id."'";
|
||||||
return 'select '.$SQL['metadataPrefix'].' FROM '.$SQL['table']. " WHERE ".$SQL['identifier']." = '".$id."'";
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/** this function will return identifier and datestamp for all records
|
/** this function will return identifier and datestamp for all records
|
||||||
* not very useful
|
* not very useful
|
||||||
*/
|
*/
|
||||||
function idQuery ($metadPrefix = "rif", $id = '')
|
function idQuery($metadPrefix = "rif", $id = '') {
|
||||||
{
|
global $SQL;
|
||||||
global $SQL;
|
|
||||||
|
|
||||||
if ($SQL['set'] != '') {
|
if ($SQL['set'] != '') {
|
||||||
$query = 'select '.$SQL['identifier'].','.$SQL['datestamp'].','.$SQL['set'].' FROM '.$SQL['table']. " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
|
$query = 'select '.$SQL['identifier'].','.$SQL['datestamp'].','.$SQL['set'].' FROM '.$SQL['table']. " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
|
||||||
} else {
|
} else {
|
||||||
$query = 'select '.$SQL['identifier'].','.$SQL['datestamp'].' FROM '.$SQL['table']. " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
|
$query = 'select '.$SQL['identifier'].','.$SQL['datestamp'].' FROM '.$SQL['table']. " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadPrefix%'";
|
||||||
}
|
}
|
||||||
|
|
||||||
if ($id != '') {
|
|
||||||
$query .= " AND ".$SQL['identifier']." = '$id'";
|
|
||||||
}
|
|
||||||
|
|
||||||
return $query;
|
if ($id != '') {
|
||||||
|
$query .= " AND ".$SQL['identifier']." = '$id'";
|
||||||
|
}
|
||||||
|
|
||||||
|
return $query;
|
||||||
}
|
}
|
||||||
|
|
||||||
/** filter for until, appends to the end of SQL query */
|
/** filter for until, appends to the end of SQL query */
|
||||||
function untilQuery($until)
|
function untilQuery($until) {
|
||||||
{
|
global $SQL;
|
||||||
global $SQL;
|
|
||||||
|
|
||||||
return ' AND '.$SQL['datestamp']." <= '$until'";
|
return ' AND '.$SQL['datestamp']." <= '$until'";
|
||||||
}
|
}
|
||||||
|
|
||||||
/** filter for from , appends to the end of SQL query */
|
/** filter for from , appends to the end of SQL query */
|
||||||
function fromQuery($from)
|
function fromQuery($from) {
|
||||||
{
|
global $SQL;
|
||||||
global $SQL;
|
|
||||||
|
|
||||||
return ' AND '.$SQL['datestamp']." >= '$from'";
|
return ' AND '.$SQL['datestamp']." >= '$from'";
|
||||||
}
|
}
|
||||||
|
|
||||||
/** filter for sets, appends to the end of SQL query */
|
/** filter for sets, appends to the end of SQL query */
|
||||||
function setQuery($set)
|
function setQuery($set) {
|
||||||
{
|
global $SQL;
|
||||||
global $SQL;
|
// strip off "class:" which is not saved in database
|
||||||
// strip off "class:" which is not saved in database
|
if(strstr($set,"class:")) $set = substr($set,6);
|
||||||
if(strstr($set,"class:")) $set = substr($set,6);
|
return ' AND '.$SQL['set']." LIKE '%$set%'";
|
||||||
return ' AND '.$SQL['set']." LIKE '%$set%'";
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/** for accurately to assess how many records satisfy conditions for all DBs */
|
/** for accurately to assess how many records satisfy conditions for all DBs */
|
||||||
function rowCount($metadataPrefix, $extQuery, $db) {
|
function rowCount($metadataPrefix, $extQuery, $db) {
|
||||||
global $SQL;
|
global $SQL;
|
||||||
$n = 0;
|
$n = 0;
|
||||||
$sql = "SELECT COUNT(*) FROM ".$SQL['table'] . " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadataPrefix%'" . $extQuery;
|
$sql = "SELECT COUNT(*) FROM ".$SQL['table'] . " WHERE ".$SQL['metadataPrefix']." LIKE '%$metadataPrefix%'" . $extQuery;
|
||||||
if ($res = $db->query($sql)) {
|
if ($res = $db->query($sql)) {
|
||||||
$n = $res->fetchColumn();
|
$n = $res->fetchColumn();
|
||||||
}
|
}
|
||||||
return $n;
|
return $n;
|
||||||
}
|
}
|
||||||
|
|
||||||
/** A worker function for processing an error when a query was executed
|
/** A worker function for processing an error when a query was executed
|
||||||
* \param $query string, original query
|
* \param $query string, original query
|
||||||
* \param $e PDOException, the PDOException object
|
* \param $e PDOException, the PDOException object
|
||||||
*/
|
*/
|
||||||
function process_pdo_error($query, $e) {
|
function process_pdo_error($query, $e) {
|
||||||
echo $query.' was failed\n';
|
echo $query.' was failed\n';
|
||||||
echo $e->getMessage();
|
echo $e->getMessage();
|
||||||
}
|
}
|
||||||
|
|
||||||
/** When query return no result, throw an Exception of Not found.
|
/** When query return no result, throw an Exception of Not found.
|
||||||
|
|
@ -322,11 +313,9 @@ function process_pdo_error($query, $e) {
|
||||||
* \param $query string
|
* \param $query string
|
||||||
* \return $res PDOStatement
|
* \return $res PDOStatement
|
||||||
*/
|
*/
|
||||||
function exec_pdo_query($db, $query)
|
function exec_pdo_query($db, $query) {
|
||||||
{
|
$res = $db->query($query);
|
||||||
$res = $db->query($query);
|
if ($res===false) {
|
||||||
if ($res===false) {
|
throw new Exception($query.":\nIt found nothing.\n");
|
||||||
throw new Exception($query.":\nIt found nothing.\n");
|
} else return $res;
|
||||||
} else return $res;
|
|
||||||
}
|
}
|
||||||
?>
|
|
||||||
|
|
|
||||||
|
|
@ -12,7 +12,7 @@
|
||||||
* As XML output document and the database connection are the same, it is possible to design otherwise.
|
* As XML output document and the database connection are the same, it is possible to design otherwise.
|
||||||
*
|
*
|
||||||
* \sa oaidp-config.php
|
* \sa oaidp-config.php
|
||||||
*/
|
*/
|
||||||
|
|
||||||
// This handles RIF-CS records, but can be also used as a sample
|
// This handles RIF-CS records, but can be also used as a sample
|
||||||
// for other formats.
|
// for other formats.
|
||||||
|
|
@ -20,15 +20,15 @@
|
||||||
|
|
||||||
// Create a metadata object and a registryObjects, and its only child registryObject
|
// Create a metadata object and a registryObjects, and its only child registryObject
|
||||||
function create_metadata($outputObj, $cur_record, $identifier, $setspec, $db) {
|
function create_metadata($outputObj, $cur_record, $identifier, $setspec, $db) {
|
||||||
// debug_message('In '.__FILE__.' function '.__FUNCTION__.' was called.');
|
// debug_message('In '.__FILE__.' function '.__FUNCTION__.' was called.');
|
||||||
|
|
||||||
// debug_var_dump('metadata_node',$metadata_node);
|
// debug_var_dump('metadata_node',$metadata_node);
|
||||||
$metadata_node = $outputObj->create_metadata($cur_record);
|
$metadata_node = $outputObj->create_metadata($cur_record);
|
||||||
$obj_node = new ANDS_TPA($outputObj, $metadata_node, $db);
|
$obj_node = new ANDS_TPA($outputObj, $metadata_node, $db);
|
||||||
try {
|
try {
|
||||||
$obj_node->create_obj_node($setspec, $identifier);
|
$obj_node->create_obj_node($setspec, $identifier);
|
||||||
} catch (Exception $e) {
|
} catch (Exception $e) {
|
||||||
echo 'Caught exception: ', $e->getMessage(), " when adding $identifier\n";
|
echo 'Caught exception: ', $e->getMessage(), " when adding $identifier\n";
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -60,29 +60,29 @@ function oai_error($code, $argument = '', $value = '')
|
||||||
{
|
{
|
||||||
switch ($code) {
|
switch ($code) {
|
||||||
case 'badArgument' :
|
case 'badArgument' :
|
||||||
$text = "The argument '$argument' (value='$value') included in the request is not valid.";
|
$text = "Attribute '{$argument}' is not allowed to appear in element 'request'";
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'badGranularity' :
|
case 'badGranularity' :
|
||||||
$text = "The value '$value' of the argument '$argument' is not valid.";
|
$text = "The value '{$value}' of the argument '{$argument}' is not valid.";
|
||||||
$code = 'badArgument';
|
$code = 'badArgument';
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'badResumptionToken' :
|
case 'badResumptionToken' :
|
||||||
$text = "The resumptionToken '$value' does not exist or has already expired.";
|
$text = "The resumptionToken '{$value}' does not exist or has already expired.";
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'badRequestMethod' :
|
case 'badRequestMethod' :
|
||||||
$text = "The request method '$argument' is unknown.";
|
$text = "The request method '{$argument}' is unknown.";
|
||||||
$code = 'badVerb';
|
$code = 'badVerb';
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'badVerb' :
|
case 'badVerb' :
|
||||||
$text = "The verb '$argument' provided in the request is illegal.";
|
$text = "The verb '{$argument}' provided in the request is illegal.";
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'cannotDisseminateFormat' :
|
case 'cannotDisseminateFormat' :
|
||||||
$text = "The metadata format '$value' given by $argument is not supported by this repository.";
|
$text = "The metadata format '{$value}' given by {$argument} is not supported by this repository.";
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'exclusiveArgument' :
|
case 'exclusiveArgument' :
|
||||||
|
|
@ -91,7 +91,7 @@ function oai_error($code, $argument = '', $value = '')
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'idDoesNotExist' :
|
case 'idDoesNotExist' :
|
||||||
$text = "The value '$value' of the identifier does not exist in this repository.";
|
$text = "The value '{$value}' of the identifier does not exist in this repository.";
|
||||||
if (!is_valid_uri($value)) {
|
if (!is_valid_uri($value)) {
|
||||||
$code = 'badArgument';
|
$code = 'badArgument';
|
||||||
$text .= ' Invalidated URI has been detected.';
|
$text .= ' Invalidated URI has been detected.';
|
||||||
|
|
@ -99,7 +99,7 @@ function oai_error($code, $argument = '', $value = '')
|
||||||
break;
|
break;
|
||||||
|
|
||||||
case 'missingArgument' :
|
case 'missingArgument' :
|
||||||
$text = "The required argument '$argument' is missing in the request.";
|
$text = "The required argument '{$argument}' is missing in the request.";
|
||||||
$code = 'badArgument';
|
$code = 'badArgument';
|
||||||
break;
|
break;
|
||||||
|
|
||||||
|
|
@ -136,7 +136,7 @@ function oai_error($code, $argument = '', $value = '')
|
||||||
break;
|
break;
|
||||||
|
|
||||||
default:
|
default:
|
||||||
$text = "Unknown error: code: '$code', argument: '$argument', value: '$value'";
|
$text = "Unknown error: code: '{$code}', argument: '{$argument}', value: '{$value}'";
|
||||||
$code = 'badArgument';
|
$code = 'badArgument';
|
||||||
}
|
}
|
||||||
return $code."|".$text;
|
return $code."|".$text;
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue