138 lines
5.4 KiB
Markdown
138 lines
5.4 KiB
Markdown
# OpenRefine Task Runner (💎+🤖)
|
|
|
|
[](https://www.codacy.com/gh/opencultureconsulting/openrefine-task-runner/dashboard) [](https://notebooks.gesis.org/binder/v2/gh/opencultureconsulting/openrefine-task-runner/main?urlpath=lab/tree/demo.ipynb)
|
|
|
|
Templates for OpenRefine batch processing (import, transform, export) using the task runner [go-task](https://github.com/go-task/task) and the [openrefine-client](https://github.com/opencultureconsulting/openrefine-client) to control OpenRefine via [its HTTP API](https://docs.openrefine.org/technical-reference/openrefine-api).
|
|
|
|
## Features
|
|
|
|
* run tasks in parallel
|
|
* basic error handling by monitoring the OpenRefine server log
|
|
* dedicated OpenRefine instances for each task (your existing OpenRefine data will not be touched)
|
|
* prevent unnecessary work by fingerprinting generated files and their sources
|
|
* the [openrefine-client](https://github.com/opencultureconsulting/openrefine-client) used here supports many core features of OpenRefine:
|
|
* import CSV, TSV, line-based TXT, fixed-width TXT, JSON or XML (and specify input options)
|
|
* apply [undo/redo history](https://docs.openrefine.org/manual/running/#reusing-operations) from given JSON file(s)
|
|
* export to CSV, TSV, HTML, XLS, XLSX, ODS
|
|
* [templating export](https://github.com/opencultureconsulting/openrefine-client#templating) to additional formats like JSON or XML
|
|
* works with OpenRefine 2.7, 2.8, 3.0, 3.1, 3.2, 3.3, 3.4, 3.4.1 and 3.5.0
|
|
* tasks are easy to extend with additional commands (e.g. to download input data or validate results)
|
|
|
|
## Typical workflow
|
|
|
|
**Step 1**: Do some experiments with your data (or parts of it) in the graphical user interface of OpenRefine. If you are fine with all transformation rules, [extract the json code](http://kb.refinepro.com/2012/06/google-refine-json-and-my-notepad-or.html) and save it as file (e.g. dedup.json).
|
|
|
|
**Step 2**: Configure a task to automate importing your data set, applying the json file and exporting to the required output format.
|
|
|
|
**Possible automation benefits:**
|
|
|
|
* When you receive updated data (in the same structure), you just need to drop the file and start the task like this:
|
|
|
|
```sh
|
|
task example-doaj
|
|
```
|
|
|
|
* The entire data processing (including options during import) becomes reproducible. The task configuration file can also be used for documentation through source code comments.
|
|
|
|
* Metadata experts can use OpenRefine's graphical interface and IT staff can incorporate the created transformation rules into regular data processing flows.
|
|
|
|
## Requirements
|
|
|
|
* GNU/Linux (tested with Fedora 32)
|
|
* JAVA 8+ (for OpenRefine)
|
|
|
|
## Demo via binder
|
|
|
|
[](https://notebooks.gesis.org/binder/v2/gh/opencultureconsulting/openrefine-task-runner/main?urlpath=lab/tree/demo.ipynb)
|
|
|
|
- free to use on-demand server with Jupyterlab and Bash Kernel
|
|
- OpenRefine, openrefine-client and go-task [preinstalled](binder/postBuild)
|
|
- no registration needed, will start within a few minutes
|
|
- [restricted](https://notebooks.gesis.org/faq/) to 4 GB RAM and server will be deleted after 10 minutes of inactivity
|
|
- service is provided by GESIS and is intended for use by social scientists
|
|
|
|
## Install
|
|
|
|
1. Clone this git repository
|
|
|
|
```sh
|
|
git clone https://github.com/opencultureconsulting/openrefine-task-runner.git
|
|
cd openrefine-task-runner
|
|
```
|
|
|
|
2. Install [Task 3.2.2](https://github.com/go-task/task/releases/tag/v3.2.2)
|
|
|
|
a) RPM-based (Fedora, CentOS, SLES, etc.)
|
|
|
|
```sh
|
|
wget https://github.com/go-task/task/releases/download/v3.2.2/task_linux_amd64.rpm
|
|
sudo dnf install ./task_linux_amd64.rpm && rm task_linux_amd64.rpm
|
|
```
|
|
|
|
b) DEB-based (Debian, Ubuntu etc.)
|
|
|
|
```sh
|
|
wget https://github.com/go-task/task/releases/download/v3.2.2/task_linux_amd64.deb
|
|
sudo apt install ./task_linux_amd64.deb && rm task_linux_amd64.deb
|
|
```
|
|
|
|
3. Run install task to download [OpenRefine 3.5.0](https://github.com/OpenRefine/OpenRefine/releases/tag/3.5.0) and [openrefine-client 0.3.10](https://github.com/opencultureconsulting/openrefine-client/releases/tag/v0.3.10)
|
|
|
|
```sh
|
|
task install
|
|
```
|
|
|
|
## Usage
|
|
|
|
* Run all tasks in parallel
|
|
|
|
```sh
|
|
task
|
|
```
|
|
|
|
* Run a specific task
|
|
|
|
```sh
|
|
task example-duplicates:main
|
|
```
|
|
|
|
* Run some tasks in parallel
|
|
|
|
```sh
|
|
task --parallel example-duplicates:main example-doaj:main
|
|
```
|
|
|
|
* Force run a task even when the task is up-to-date
|
|
|
|
```sh
|
|
task example-duplicates:main --force
|
|
```
|
|
|
|
* Dry-run in verbose mode for debugging
|
|
|
|
```sh
|
|
task example-duplicates:main --dry --verbose --force
|
|
```
|
|
|
|
* List available tasks
|
|
|
|
```sh
|
|
task --list
|
|
```
|
|
|
|
### How to develop your own tasks
|
|
|
|
(first draft, will be elaborated later)
|
|
|
|
1. create a new folder
|
|
2. copy an example Taskfile.yml
|
|
3. provide input data in subdirectory input
|
|
4. provide OpenRefine transformation history files in subdirectory config
|
|
5. add commands to specific Taskfile (check openrefine-client help screen for available options: `openrefine/client --help`)
|
|
6. add project to general Taskfile
|
|
7. check memory load and increase RAM if needed
|
|
|
|
### Getting help
|
|
|
|
Please file an [issue](https://github.com/opencultureconsulting/openrefine-task-runner/issues) if you miss some features or if you have tracked a bug. And you are welcome to ask any questions!
|