opencultureconsulting
/
orcli
mirror of https://github.com/opencultureconsulting/orcli.git
2
0
Fork 0
Code Issues Releases Activity

Merge pull request #48 from opencultureconsulting:felixlohmeier/batch-6 

first draft batch processing
This commit is contained in:
Felix Lohmeier 2022-04-20 12:32:02 +02:00 committed by GitHub
parent a2b921895b 6979c41e8a
commit dec171f4e3
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
8 changed files with 476 additions and 65 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

20
README.md
View File

@ -56,9 +56,11 @@ Usage:
orcli --version | -v
Commands:
info show project metadata
batch start tmp OpenRefine workspace and run multiple orcli commands
import import commands
list list projects on OpenRefine server
info show project metadata
export export commands
Options:
--help, -h
@ -73,12 +75,15 @@ Environment Variables:
Default: http://localhost:3333
Examples:
orcli import csv "https://git.io/fj5hF" --projectName "duplicates"
orcli list
orcli import csv file
orcli import csv
"https://github.com/LibraryCarpentry/lc-open-refine/raw/gh-pages/data/doaj-article-sample.csv"
orcli info Clipboard
orcli info 1234567890123
orcli info "duplicates"
orcli export tsv "duplicates"
orcli export tsv "duplicates" --output "duplicates.tsv"
orcli batch \
import csv "https://git.io/fj5hF" --projectName "duplicates" \
info "duplicates" \
export tsv "duplicates"
https://github.com/opencultureconsulting/orcli
```
@ -95,9 +100,8 @@ gem install bashly
2. Edit code in [src](src) directory
3. Validate and generate script
3. Generate script
```sh
bashly validate
bashly generate
```

348
orcli
View File

@ -34,6 +34,7 @@ orcli_usage() {
echo
# :command.usage_commands
printf "Commands:\n"
echo " batch start tmp OpenRefine workspace and run multiple orcli commands"
echo " import import commands"
echo " list list projects on OpenRefine server"
echo " info show project metadata"
@ -61,12 +62,12 @@ orcli_usage() {
# :command.usage_examples
printf "Examples:\n"
printf " orcli import csv file\n"
printf " orcli import csv\n \"https://github.com/LibraryCarpentry/lc-open-refine/raw/gh-pages/data/doaj-article-sample.csv\"\n"
printf " orcli import csv \"https://git.io/fj5hF\" --projectName \"duplicates\"\n"
printf " orcli list\n"
printf " orcli info \"doaj article sample csv\"\n"
printf " orcli export tsv \"doaj article sample csv\"\n"
printf " orcli export tsv \"doaj article sample csv\" --output doaj.tsv\n"
printf " orcli info \"duplicates\"\n"
printf " orcli export tsv \"duplicates\"\n"
printf " orcli export tsv \"duplicates\" --output \"duplicates.tsv\"\n"
printf " orcli batch \\\\\n import csv \"https://git.io/fj5hF\" --projectName \"duplicates\" \\\\\n info \"duplicates\" \\\\\n export tsv \"duplicates\"\n"
echo
# :command.footer
printf "https://github.com/opencultureconsulting/orcli\n"
@ -75,6 +76,64 @@ orcli_usage() {
fi
}
# :command.usage
orcli_batch_usage() {
if [[ -n $long_usage ]]; then
printf "orcli batch - start tmp OpenRefine workspace and run multiple orcli commands\n"
echo
else
printf "orcli batch - start tmp OpenRefine workspace and run multiple orcli commands\n"
echo
fi
printf "Usage:\n"
printf " orcli batch [options] ORCLI COMMANDS...\n"
printf " orcli batch --help | -h\n"
echo
if [[ -n $long_usage ]]; then
printf "Options:\n"
# :command.usage_fixed_flags
echo " --help, -h"
printf " Show this help\n"
echo
# :command.usage_flags
# :flag.usage
echo " --memory RAM"
printf " maximum RAM for OpenRefine java heap space\n"
printf " Default: 2048M\n"
echo
# :flag.usage
echo " --port PORT"
printf " PORT on which OpenRefine should listen\n"
printf " Default: 3333\n"
echo
# :flag.usage
echo " --quiet, -q"
printf " suppress log output, print errors only\n"
echo
# :command.usage_args
printf "Arguments:\n"
echo " ORCLI COMMANDS..."
printf " provide orcli commands without further separators (see examples below)\n avoid \"import\" \"info\" \"list\" \"transform\" \"export\" in file or project names\n use bash -c to execute custom commands\n"
echo
# :command.usage_examples
printf "Examples:\n"
printf " orcli batch \\\\\n import csv \"https://git.io/fj5hF\" --projectName \"duplicates\" \\\\\n info \"duplicates\" \\\\\n export tsv \"duplicates\"\n"
printf " orcli batch --memory \"2000M\" --port \"3334\" \\\\\n import csv \"https://git.io/fj5hF\" --projectName \"duplicates\" \\\\\n export tsv \"duplicates\"\n"
printf " orcli batch --quiet \\\\\n import csv \"https://git.io/fj5hF\" --projectName \"duplicates\" \\\\\n export tsv \"duplicates\" --output \"output/duplicates.tsv\" \\\\\n bash -c 'wc -l output/*; echo \"finished\" in \$SECONDS seconds'\n"
echo
fi
}
# :command.usage
orcli_import_usage() {
if [[ -n $long_usage ]]; then
@ -150,6 +209,11 @@ orcli_import_csv_usage() {
echo " --projectName PROJECTNAME"
printf " set a name for the OpenRefine project\n"
echo
# :flag.usage
echo " --quiet, -q"
printf " suppress log output, print errors only\n"
echo
# :command.usage_args
printf "Arguments:\n"
@ -162,10 +226,11 @@ orcli_import_csv_usage() {
# :command.usage_examples
printf "Examples:\n"
printf " orcli import csv file\n"
printf " cat file | orcli import csv\n"
printf " orcli import csv file --separator ; --encoding ISO-8859-1 --trimStrings\n --projectName example\n"
printf " orcli import csv\n \"https://github.com/LibraryCarpentry/lc-open-refine/raw/gh-pages/data/doaj-article-sample.csv\"\n"
printf " orcli import csv \"file\"\n"
printf " orcli import csv \"file1\" \"file2\"\n"
printf " cat \"file\" | orcli import csv\n"
printf " orcli import csv \"https://git.io/fj5hF\"\n"
printf " orcli import csv \"file\" \\\\\n --separator \";\" \\\\\n --encoding \"ISO-8859-1\" \\\\\n --trimStrings \\\\\n --projectName \"duplicates\"\n"
echo
fi
@ -184,7 +249,7 @@ orcli_list_usage() {
fi
printf "Usage:\n"
printf " orcli list\n"
printf " orcli list [options]\n"
printf " orcli list --help | -h\n"
echo
@ -194,6 +259,11 @@ orcli_list_usage() {
echo " --help, -h"
printf " Show this help\n"
echo
# :command.usage_flags
# :flag.usage
echo " --quiet, -q"
printf " suppress log output, print errors only\n"
echo
fi
}
@ -211,7 +281,7 @@ orcli_info_usage() {
fi
printf "Usage:\n"
printf " orcli info PROJECT\n"
printf " orcli info PROJECT [options]\n"
printf " orcli info --help | -h\n"
echo
@ -221,7 +291,11 @@ orcli_info_usage() {
echo " --help, -h"
printf " Show this help\n"
echo
# :command.usage_flags
# :flag.usage
echo " --quiet, -q"
printf " suppress log output, print errors only\n"
echo
# :command.usage_args
printf "Arguments:\n"
@ -233,7 +307,7 @@ orcli_info_usage() {
# :command.usage_examples
printf "Examples:\n"
printf " info Clipboard\n"
printf " info \"duplicates\"\n"
printf " info 1234567890123\n"
echo
@ -305,6 +379,11 @@ orcli_export_tsv_usage() {
printf " set character encoding\n"
printf " Default: UTF-8\n"
echo
# :flag.usage
echo " --quiet, -q"
printf " suppress log output, print errors only\n"
echo
# :command.usage_args
printf "Arguments:\n"
@ -316,8 +395,8 @@ orcli_export_tsv_usage() {
# :command.usage_examples
printf "Examples:\n"
printf " orcli export tsv Clipboard\n"
printf " orcli export tsv Clipboard --output clipboard.tsv\n"
printf " orcli export tsv \"duplicates\"\n"
printf " orcli export tsv \"duplicates\" --output \"duplicates.tsv\"\n"
echo
fi
@ -409,9 +488,7 @@ function get_id() {
# common import tasks to support multiple files and URLs
# shellcheck shell=bash
function init_import() {
local files
local file
local tmpdir
local files file tmpdir
# catch args, convert the space delimited string to an array
files=()
eval "files=(${args[file]})"
@ -421,16 +498,27 @@ function init_import() {
# download files if name starts with http:// or https://
for i in "${!files[@]}"; do
if [[ ${files[$i]} == "http://"* ]] || [[ ${files[$i]} == "https://"* ]]; then
if ! curl -fs --location "${files[$i]}" >"${tmpdir}/${files[$i]##*/}"; then
if ! curl -fs --location "${files[$i]}" >"${tmpdir}/${files[$i]//[^A-Za-z0-9._-]/_}"; then
error "download of ${files[$i]} failed!"
fi
files[$i]="${tmpdir}/${files[$i]##*/}"
files[$i]="${tmpdir}/${files[$i]//[^A-Za-z0-9._-]/_}"
fi
done
# read pipes if name starts with /dev/fd
for i in "${!files[@]}"; do
if [[ ${files[$i]} == "/dev/fd"* ]]; then
if ! cat "${files[$i]}" >"${tmpdir}/${files[$i]//[^A-Za-z0-9._-]/_}"; then
error "reading of ${files[$i]} failed!"
fi
files[$i]="${tmpdir}/${files[$i]//[^A-Za-z0-9._-]/_}"
fi
done
# create a zip archive if there are multiple files
if [[ ${#files[@]} -gt 1 ]]; then
file="$tmpdir/Untitled.zip"
zip "$file" "${files[@]}"
if ! zip --quiet --must-match "$file" "${files[@]}"; then
error "creating zip archive with ${files[*]} failed!"
fi
else
file="${files[0]}"
fi
@ -461,13 +549,15 @@ function init_import() {
function error() {
echo >&2 "[$(date +'%Y-%m-%dT%H:%M:%S')] ERROR: $1"
shift
for msg in "$@"; do echo >&2 "$msg"; done
for msg in "$@"; do echo >&2 " $msg"; done
exit 1
}
function log() {
echo >&2 "[$(date +'%Y-%m-%dT%H:%M:%S')] $1"
shift
for msg in "$@"; do echo >&2 "$msg"; done
if ! [[ ${args[--quiet]} ]]; then
echo >&2 "[$(date +'%Y-%m-%dT%H:%M:%S')] $1"
shift
for msg in "$@"; do echo >&2 " $msg"; done
fi
}
# src/lib/post_import.sh
@ -484,24 +574,92 @@ function post_import() {
echo "$d"
done)
if ! redirect_url="$(curl -fs --write-out "%{redirect_url}\n" "${curloptions[@]}" "${OPENREFINE_URL}/command/core/create-project-from-upload$(get_csrf)")"; then
error "import of ${args[file]} failed!"
error "importing ${args[file]} failed!"
fi
# validate
projectid=$(cut -d '=' -f 2 <<<"$redirect_url")
if [[ ${#projectid} != 13 ]]; then
error "import of ${args[file]} failed!"
error "importing ${args[file]} failed!"
fi
projectname=$(curl -fs --get --data project="$projectid" "${OPENREFINE_URL}/command/core/get-project-metadata" | tr "," "\n" | grep name | cut -d ":" -f 2)
projectname="${projectname:1:${#projectname}-2}"
rows=$(curl -fs --get --data project="$projectid" --data limit=0 "${OPENREFINE_URL}/command/core/get-rows" | tr "," "\n" | grep total | cut -d ":" -f 2)
if [[ "$rows" = "0" ]]; then
error "import of ${args[file]} contains 0 rows!" "${redirect_url}" "name:${projectname}" "rows:${rows}"
error "import of ${args[file]} contains 0 rows!"
else
log "import of ${args[file]} successful" "${redirect_url}" "name:${projectname}" "rows:${rows}"
log "imported ${args[file]}" "${redirect_url}" "name: ${projectname}" "rows: ${rows}"
fi
}
# :command.command_functions
# :command.function
orcli_batch_command() {
# src/batch_command.sh
# shellcheck shell=bash disable=SC2154
# locate orcli and OpenRefine
if command -v orcli &>/dev/null; then
orcli="orcli"
elif [[ -x "orcli" ]]; then
orcli="./orcli"
else
error "orcli is not executable!" "Try: chmod + ./orcli"
fi
if [[ -x "refine" ]]; then
openrefine="./refine"
else
error "OpenRefine's startup script (refine) not found!" "Did you put orcli in your OpenRefine app dir?"
fi
# create tmp directory
tmpdir="$(mktemp -d)"
trap '{ rm -rf "$tmpdir"; }' 0 2 3 15
# update OPENREFINE_URL env
OPENREFINE_URL="http://localhost:${args[--port]}"
# check if OpenRefine is already running
if curl -fs "${OPENREFINE_URL}" &>/dev/null; then
error "OpenRefine is already running on port ${args[--port]}." "Hint: Stop the other process or use another port."
fi
# start OpenRefine with tmp workspace and autosave period 25 hours
$openrefine -d "$tmpdir" -m "${args[--memory]}" -p "${args[--port]}" -x refine.autosave=1440 -v warn &>"$tmpdir/openrefine.log" &
openrefine_pid="$!"
# update trap to kill OpenRefine on error or exit
trap '{ rm -rf "$tmpdir"; kill -9 "$openrefine_pid"; }' 0 2 3 15
# wait until OpenRefine is running (timeout 20s)
if ! curl -fs --retry 20 --retry-connrefused --retry-delay 1 "${OPENREFINE_URL}/command/core/get-version" &>/dev/null; then
error "starting OpenRefine server failed!"
else
log "started OpenRefine" "port: ${args[--port]}" "memory: ${args[--memory]}" "tmpdir: ${tmpdir}" "pid: ${openrefine_pid}"
fi
# assemble command groups from catch-all
i=0
for arg in "${other_args[@]}"; do
if [[ $arg =~ ^(bash|import|info|list|transform|export)$ ]]; then
((i = i + 1))
groups+=("group$i")
fi
declare -a group${i}+="(\"$arg\")"
done
# call command for each group
for group in "${groups[@]}"; do
declare arrayRef="${group}[@]"
command=("${!arrayRef}")
if [[ ${command[0]} == "bash" ]]; then
"${command[@]}"
elif [[ ${args[--quiet]} ]]; then
"$orcli" "${command[@]}" --quiet
else
"$orcli" "${command[@]}"
fi
done
}
# :command.function
orcli_import_csv_command() {
@ -545,7 +703,7 @@ orcli_list_command() {
error "no OpenRefine reachable/running at ${OPENREFINE_URL}"
else
if [[ "${response}" == '{"projects":{}}' ]]; then
log "${OPENREFINE_URL} contains zero projects"
log "${OPENREFINE_URL} does not contain any projects yet."
else
echo "$response" | jq -r '.projects | keys[] as $k | "\($k):\(.[$k] | .name)"'
fi
@ -591,10 +749,10 @@ orcli_export_tsv_command() {
curloptions+=("${args[--output]}")
fi
if ! curl -fs "${curloptions[@]}" "${OPENREFINE_URL}/command/core/export-rows"; then
error "export of ${args[project]} failed!"
error "exporting ${args[project]} failed!"
else
if [[ ${args[--output]} ]]; then
log "export of ${args[project]} successful" "file:${args[--output]}" "rows:$(cat "${args[--output]}" | wc -l )"
log "exported ${args[project]}" "file: ${args[--output]}" "rows: $(wc -l <"${args[--output]}")"
fi
fi
}
@ -633,6 +791,13 @@ parse_requirements() {
-* )
;;
batch )
action="batch"
shift
orcli_batch_parse_requirements "$@"
shift $#
;;
import )
action="import"
shift
@ -694,6 +859,87 @@ parse_requirements() {
# :command.user_filter
}
# :command.parse_requirements
orcli_batch_parse_requirements() {
# :command.fixed_flags_filter
case "${1:-}" in
--help | -h )
long_usage=yes
orcli_batch_usage
exit
;;
esac
# :command.environment_variables_filter
# :command.dependencies_filter
# :command.command_filter
action="batch"
# :command.parse_requirements_while
while [[ $# -gt 0 ]]; do
key="$1"
case "$key" in
# :flag.case
--memory )
# :flag.conflicts
if [[ -n ${2+x} ]]; then
# :flag.validations
args[--memory]="$2"
shift
shift
else
printf "%s\n" "--memory requires an argument: --memory RAM"
exit 1
fi
;;
# :flag.case
--port )
# :flag.conflicts
if [[ -n ${2+x} ]]; then
# :flag.validations
args[--port]="$2"
shift
shift
else
printf "%s\n" "--port requires an argument: --port PORT"
exit 1
fi
;;
# :flag.case
--quiet | -q )
# :flag.conflicts
args[--quiet]=1
shift
;;
-?* )
other_args+=("$1")
shift
;;
* )
# :command.parse_requirements_case
other_args+=("$1")
shift
;;
esac
done
# :command.required_args_filter
# :command.required_flags_filter
# :command.catch_all_filter
if [[ ${#other_args[@]} -eq 0 ]]; then
printf "missing required argument: ORCLI COMMANDS...\nusage: orcli batch [options] ORCLI COMMANDS...\n"
exit 1
fi
# :command.default_assignments
[[ -n ${args[--memory]:-} ]] || args[--memory]="2048M"
[[ -n ${args[--port]:-} ]] || args[--port]="3333"
# :command.whitelist_filter
# :command.user_filter
}
# :command.parse_requirements
orcli_import_parse_requirements() {
# :command.fixed_flags_filter
@ -822,6 +1068,13 @@ orcli_import_csv_parse_requirements() {
fi
;;
# :flag.case
--quiet | -q )
# :flag.conflicts
args[--quiet]=1
shift
;;
-?* )
printf "invalid option: %s\n" "$key"
exit 1
@ -870,6 +1123,12 @@ orcli_list_parse_requirements() {
while [[ $# -gt 0 ]]; do
key="$1"
case "$key" in
# :flag.case
--quiet | -q )
# :flag.conflicts
args[--quiet]=1
shift
;;
-?* )
printf "invalid option: %s\n" "$key"
@ -911,6 +1170,12 @@ orcli_info_parse_requirements() {
while [[ $# -gt 0 ]]; do
key="$1"
case "$key" in
# :flag.case
--quiet | -q )
# :flag.conflicts
args[--quiet]=1
shift
;;
-?* )
printf "invalid option: %s\n" "$key"
@ -933,7 +1198,7 @@ orcli_info_parse_requirements() {
done
# :command.required_args_filter
if [[ -z ${args[project]+x} ]]; then
printf "missing required argument: PROJECT\nusage: orcli info PROJECT\n"
printf "missing required argument: PROJECT\nusage: orcli info PROJECT [options]\n"
exit 1
fi
# :command.required_flags_filter
@ -1050,6 +1315,13 @@ orcli_export_tsv_parse_requirements() {
fi
;;
# :flag.case
--quiet | -q )
# :flag.conflicts
args[--quiet]=1
shift
;;
-?* )
printf "invalid option: %s\n" "$key"
exit 1
@ -1099,7 +1371,15 @@ run() {
normalize_input "$@"
parse_requirements "${input[@]}"
if [[ $action == "import" ]]; then
if [[ $action == "batch" ]]; then
if [[ ${args[--help]:-} ]]; then
long_usage=yes
orcli_batch_usage
else
orcli_batch_command
fi
elif [[ $action == "import" ]]; then
if [[ ${args[--help]:-} ]]; then
long_usage=yes
orcli_import_usage

85
src/bashly.yml
View File

@ -13,14 +13,55 @@ environment_variables:
default: "http://localhost:3333"
examples:
- orcli import csv file
- orcli import csv "https://github.com/LibraryCarpentry/lc-open-refine/raw/gh-pages/data/doaj-article-sample.csv"
- orcli import csv "https://git.io/fj5hF" --projectName "duplicates"
- orcli list
- orcli info "doaj article sample csv"
- orcli export tsv "doaj article sample csv"
- orcli export tsv "doaj article sample csv" --output doaj.tsv
- orcli info "duplicates"
- orcli export tsv "duplicates"
- orcli export tsv "duplicates" --output "duplicates.tsv"
- |-
orcli batch \\\\
import csv "https://git.io/fj5hF" --projectName "duplicates" \\\\
info "duplicates" \\\\
export tsv "duplicates"
commands:
- name: batch
help: start tmp OpenRefine workspace and run multiple orcli commands
catch_all:
label: orcli commands
help: |-
provide orcli commands without further separators (see examples below)
avoid "import" "info" "list" "transform" "export" in file or project names
use bash -c to execute custom commands
required: true
flags:
- long: --memory
help: maximum RAM for OpenRefine java heap space
arg: ram
default: "2048M"
- long: --port
help: PORT on which OpenRefine should listen
arg: port
default: "3333"
- long: --quiet
short: -q
help: suppress log output, print errors only
examples:
- |-
orcli batch \\\\
import csv "https://git.io/fj5hF" --projectName "duplicates" \\\\
info "duplicates" \\\\
export tsv "duplicates"
- |-
orcli batch --memory "2000M" --port "3334" \\\\
import csv "https://git.io/fj5hF" --projectName "duplicates" \\\\
export tsv "duplicates"
- |-
orcli batch --quiet \\\\
import csv "https://git.io/fj5hF" --projectName "duplicates" \\\\
export tsv "duplicates" --output "output/duplicates.tsv" \\\\
bash -c 'wc -l output/*; echo "finished" in \$SECONDS seconds'
- name: import
help: import commands
@ -45,14 +86,27 @@ commands:
- long: --projectName
arg: projectName
help: set a name for the OpenRefine project
- long: --quiet
short: -q
help: suppress log output, print errors only
examples:
- orcli import csv file
- cat file | orcli import csv
- orcli import csv file --separator ; --encoding ISO-8859-1 --trimStrings --projectName example
- orcli import csv "https://github.com/LibraryCarpentry/lc-open-refine/raw/gh-pages/data/doaj-article-sample.csv"
- orcli import csv "file"
- orcli import csv "file1" "file2"
- cat "file" | orcli import csv
- orcli import csv "https://git.io/fj5hF"
- |-
orcli import csv "file" \\\\
--separator ";" \\\\
--encoding "ISO-8859-1" \\\\
--trimStrings \\\\
--projectName "duplicates"
- name: list
help: list projects on OpenRefine server
flags:
- long: --quiet
short: -q
help: suppress log output, print errors only
- name: info
help: show project metadata
@ -60,8 +114,12 @@ commands:
- name: project
help: project name or id
required: true
flags:
- long: --quiet
short: -q
help: suppress log output, print errors only
examples:
- info Clipboard
- info "duplicates"
- info 1234567890123
- name: export
@ -82,6 +140,9 @@ commands:
help: set character encoding
arg: encoding
default: "UTF-8"
- long: --quiet
short: -q
help: suppress log output, print errors only
examples:
- orcli export tsv Clipboard
- orcli export tsv Clipboard --output clipboard.tsv
- orcli export tsv "duplicates"
- orcli export tsv "duplicates" --output "duplicates.tsv"

64
src/batch_command.sh Normal file
View File

@ -0,0 +1,64 @@
# shellcheck shell=bash disable=SC2154
# locate orcli and OpenRefine
if command -v orcli &>/dev/null; then
orcli="orcli"
elif [[ -x "orcli" ]]; then
orcli="./orcli"
else
error "orcli is not executable!" "Try: chmod + ./orcli"
fi
if [[ -x "refine" ]]; then
openrefine="./refine"
else
error "OpenRefine's startup script (refine) not found!" "Did you put orcli in your OpenRefine app dir?"
fi
# create tmp directory
tmpdir="$(mktemp -d)"
trap '{ rm -rf "$tmpdir"; }' 0 2 3 15
# update OPENREFINE_URL env
OPENREFINE_URL="http://localhost:${args[--port]}"
# check if OpenRefine is already running
if curl -fs "${OPENREFINE_URL}" &>/dev/null; then
error "OpenRefine is already running on port ${args[--port]}." "Hint: Stop the other process or use another port."
fi
# start OpenRefine with tmp workspace and autosave period 25 hours
$openrefine -d "$tmpdir" -m "${args[--memory]}" -p "${args[--port]}" -x refine.autosave=1440 -v warn &>"$tmpdir/openrefine.log" &
openrefine_pid="$!"
# update trap to kill OpenRefine on error or exit
trap '{ rm -rf "$tmpdir"; kill -9 "$openrefine_pid"; }' 0 2 3 15
# wait until OpenRefine is running (timeout 20s)
if ! curl -fs --retry 20 --retry-connrefused --retry-delay 1 "${OPENREFINE_URL}/command/core/get-version" &>/dev/null; then
error "starting OpenRefine server failed!"
else
log "started OpenRefine" "port: ${args[--port]}" "memory: ${args[--memory]}" "tmpdir: ${tmpdir}" "pid: ${openrefine_pid}"
fi
# assemble command groups from catch-all
i=0
for arg in "${other_args[@]}"; do
if [[ $arg =~ ^(bash|import|info|list|transform|export)$ ]]; then
((i = i + 1))
groups+=("group$i")
fi
declare -a group${i}+="(\"$arg\")"
done
# call command for each group
for group in "${groups[@]}"; do
declare arrayRef="${group}[@]"
command=("${!arrayRef}")
if [[ ${command[0]} == "bash" ]]; then
"${command[@]}"
elif [[ ${args[--quiet]} ]]; then
"$orcli" "${command[@]}" --quiet
else
"$orcli" "${command[@]}"
fi
done

4
src/export_tsv_command.sh
View File

@ -27,9 +27,9 @@ if [[ ${args[--output]} ]]; then
curloptions+=("${args[--output]}")
fi
if ! curl -fs "${curloptions[@]}" "${OPENREFINE_URL}/command/core/export-rows"; then
error "export of ${args[project]} failed!"
error "exporting ${args[project]} failed!"
else
if [[ ${args[--output]} ]]; then
log "export of ${args[project]} successful" "file:${args[--output]}" "rows:$(cat "${args[--output]}" | wc -l )"
log "exported ${args[project]}" "file: ${args[--output]}" "rows: $(wc -l <"${args[--output]}")"
fi
fi

10
src/lib/logging.sh
View File

@ -3,11 +3,13 @@
function error() {
echo >&2 "[$(date +'%Y-%m-%dT%H:%M:%S')] ERROR: $1"
shift
for msg in "$@"; do echo >&2 "$msg"; done
for msg in "$@"; do echo >&2 " $msg"; done
exit 1
}
function log() {
echo >&2 "[$(date +'%Y-%m-%dT%H:%M:%S')] $1"
shift
for msg in "$@"; do echo >&2 "$msg"; done
if ! [[ ${args[--quiet]} ]]; then
echo >&2 "[$(date +'%Y-%m-%dT%H:%M:%S')] $1"
shift
for msg in "$@"; do echo >&2 " $msg"; done
fi
}

8
src/lib/post_import.sh
View File

@ -11,19 +11,19 @@ function post_import() {
echo "$d"
done)
if ! redirect_url="$(curl -fs --write-out "%{redirect_url}\n" "${curloptions[@]}" "${OPENREFINE_URL}/command/core/create-project-from-upload$(get_csrf)")"; then
error "import of ${args[file]} failed!"
error "importing ${args[file]} failed!"
fi
# validate
projectid=$(cut -d '=' -f 2 <<<"$redirect_url")
if [[ ${#projectid} != 13 ]]; then
error "import of ${args[file]} failed!"
error "importing ${args[file]} failed!"
fi
projectname=$(curl -fs --get --data project="$projectid" "${OPENREFINE_URL}/command/core/get-project-metadata" | tr "," "\n" | grep name | cut -d ":" -f 2)
projectname="${projectname:1:${#projectname}-2}"
rows=$(curl -fs --get --data project="$projectid" --data limit=0 "${OPENREFINE_URL}/command/core/get-rows" | tr "," "\n" | grep total | cut -d ":" -f 2)
if [[ "$rows" = "0" ]]; then
error "import of ${args[file]} contains 0 rows!" "${redirect_url}" "name:${projectname}" "rows:${rows}"
error "import of ${args[file]} contains 0 rows!"
else
log "import of ${args[file]} successful" "${redirect_url}" "name:${projectname}" "rows:${rows}"
log "imported ${args[file]}" "${redirect_url}" "name: ${projectname}" "rows: ${rows}"
fi
}

2
src/list_command.sh
View File

@ -4,7 +4,7 @@ if ! response="$(curl -fs --get "${OPENREFINE_URL}/command/core/get-all-project-
error "no OpenRefine reachable/running at ${OPENREFINE_URL}"
else
if [[ "${response}" == '{"projects":{}}' ]]; then
log "${OPENREFINE_URL} contains zero projects"
log "${OPENREFINE_URL} does not contain any projects yet."
else
echo "$response" | jq -r '.projects | keys[] as $k | "\($k):\(.[$k] | .name)"'
fi