commit
603e86c60d
|
@ -11,6 +11,7 @@
|
|||
- [info](info.md)
|
||||
- [list](list.md)
|
||||
- [run](run.md)
|
||||
- [search](search.md)
|
||||
- [test](test.md)
|
||||
- [transform](transform.md)
|
||||
|
||||
|
@ -30,6 +31,7 @@ Commands:
|
|||
import commands to create OpenRefine projects from files or URLs
|
||||
list list projects on OpenRefine server
|
||||
info show OpenRefine project's metadata
|
||||
search apply regex to each column and print matches in flattened tsv format
|
||||
test run functional tests on tmp OpenRefine workspace
|
||||
transform apply undo/redo JSON file(s) to an OpenRefine project
|
||||
export commands to export data from OpenRefine projects to files
|
||||
|
@ -52,6 +54,7 @@ Examples:
|
|||
orcli list
|
||||
orcli info "duplicates"
|
||||
orcli transform "duplicates" "https://git.io/fj5ju"
|
||||
orcli search "duplicates" "^Ben"
|
||||
orcli export tsv "duplicates"
|
||||
orcli export tsv "duplicates" --output "duplicates.tsv"
|
||||
orcli delete "duplicates"
|
||||
|
|
|
@ -0,0 +1,35 @@
|
|||
# orcli search
|
||||
|
||||
```
|
||||
orcli search
|
||||
|
||||
apply regex to each column and print matches in flattened tsv format
|
||||
output: index column value
|
||||
|
||||
Usage:
|
||||
orcli search PROJECT [REGEX] [OPTIONS]
|
||||
orcli search --help | -h
|
||||
|
||||
Options:
|
||||
--index COLUMN
|
||||
print column values instead of row.index in the first column of the output
|
||||
|
||||
--help, -h
|
||||
Show this help
|
||||
|
||||
Arguments:
|
||||
PROJECT
|
||||
project name or id
|
||||
|
||||
REGEX
|
||||
search term (regular expression, case-sensitive)
|
||||
|
||||
Examples:
|
||||
orcli search "duplicates" "^Ben"
|
||||
orcli search 1234567890123 "^Ben"
|
||||
orcli search "duplicates" "^F$" --index "email"
|
||||
orcli search "duplicates" | column -t -s $' '
|
||||
|
||||
```
|
||||
|
||||
code: [src/search_command.sh](../src/search_command.sh)
|
189
orcli
189
orcli
|
@ -39,6 +39,7 @@ orcli_usage() {
|
|||
printf " %s commands to create OpenRefine projects from files or URLs\n" "import "
|
||||
printf " %s list projects on OpenRefine server\n" "list "
|
||||
printf " %s show OpenRefine project's metadata\n" "info "
|
||||
printf " %s apply regex to each column and print matches in flattened tsv format\n" "search "
|
||||
printf " %s run functional tests on tmp OpenRefine workspace\n" "test "
|
||||
printf " %s apply undo/redo JSON file(s) to an OpenRefine project\n" "transform "
|
||||
printf " %s commands to export data from OpenRefine projects to files\n" "export "
|
||||
|
@ -72,6 +73,7 @@ orcli_usage() {
|
|||
printf " orcli list\n"
|
||||
printf " orcli info \"duplicates\"\n"
|
||||
printf " orcli transform \"duplicates\" \"https://git.io/fj5ju\"\n"
|
||||
printf " orcli search \"duplicates\" \"^Ben\"\n"
|
||||
printf " orcli export tsv \"duplicates\"\n"
|
||||
printf " orcli export tsv \"duplicates\" --output \"duplicates.tsv\"\n"
|
||||
printf " orcli delete \"duplicates\"\n"
|
||||
|
@ -563,6 +565,65 @@ orcli_info_usage() {
|
|||
fi
|
||||
}
|
||||
|
||||
# :command.usage
|
||||
orcli_search_usage() {
|
||||
if [[ -n $long_usage ]]; then
|
||||
printf "orcli search\n"
|
||||
echo
|
||||
|
||||
printf " apply regex to each column and print matches in flattened tsv format\n output: index column value\n"
|
||||
echo
|
||||
|
||||
else
|
||||
printf "orcli search - apply regex to each column and print matches in flattened tsv format\n"
|
||||
echo
|
||||
|
||||
fi
|
||||
|
||||
printf "%s\n" "Usage:"
|
||||
printf " orcli search PROJECT [REGEX] [OPTIONS]\n"
|
||||
printf " orcli search --help | -h\n"
|
||||
echo
|
||||
|
||||
# :command.long_usage
|
||||
if [[ -n $long_usage ]]; then
|
||||
printf "%s\n" "Options:"
|
||||
|
||||
# :command.usage_flags
|
||||
# :flag.usage
|
||||
printf " %s\n" "--index COLUMN"
|
||||
printf " print column values instead of row.index in the first column of the output\n"
|
||||
echo
|
||||
|
||||
# :command.usage_fixed_flags
|
||||
printf " %s\n" "--help, -h"
|
||||
printf " Show this help\n"
|
||||
echo
|
||||
|
||||
# :command.usage_args
|
||||
printf "%s\n" "Arguments:"
|
||||
|
||||
# :argument.usage
|
||||
printf " %s\n" "PROJECT"
|
||||
printf " project name or id\n"
|
||||
echo
|
||||
|
||||
# :argument.usage
|
||||
printf " %s\n" "REGEX"
|
||||
printf " search term (regular expression, case-sensitive)\n"
|
||||
echo
|
||||
|
||||
# :command.usage_examples
|
||||
printf "%s\n" "Examples:"
|
||||
printf " orcli search \"duplicates\" \"^Ben\"\n"
|
||||
printf " orcli search 1234567890123 \"^Ben\"\n"
|
||||
printf " orcli search \"duplicates\" \"^F$\" --index \"email\"\n"
|
||||
printf " orcli search \"duplicates\" | column -t -s \$'\t'\n"
|
||||
echo
|
||||
|
||||
fi
|
||||
}
|
||||
|
||||
# :command.usage
|
||||
orcli_test_usage() {
|
||||
if [[ -n $long_usage ]]; then
|
||||
|
@ -1242,6 +1303,10 @@ send_completions() {
|
|||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help -h csv tsv")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' \'search\'*)'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help --index -h")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' \'export\'*)'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help -h template tsv")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
|
@ -1263,7 +1328,7 @@ send_completions() {
|
|||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' *)'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help --version -h -v completions delete export import info list run test transform")" -- "$cur" )'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help --version -h -v completions delete export import info list run search test transform")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' esac'
|
||||
|
@ -1531,6 +1596,46 @@ orcli_info_command() {
|
|||
|
||||
}
|
||||
|
||||
# :command.function
|
||||
orcli_search_command() {
|
||||
# src/search_command.sh
|
||||
# shellcheck shell=bash disable=SC2154
|
||||
|
||||
# get project id
|
||||
projectid="$(get_id "${args[project]}")"
|
||||
|
||||
# set facets config
|
||||
args['--facets']='[ { "type": "list", "expression": "grel:filter(row.columnNames,cn,cells[cn].value.find(/'
|
||||
args['--facets']+="${args[regex]}"
|
||||
args['--facets']+='/).length()>0).length()>0", "columnName": "", "selection": [ { "v": { "v": true } } ] } ]'
|
||||
|
||||
# set template
|
||||
template='{{'
|
||||
template+='forEach(filter(row.columnNames, cn, cells[cn].value.find(/'
|
||||
template+="${args[regex]}"
|
||||
template+='/).length()>0), cn,'
|
||||
if [[ ${args[--index]} ]]; then
|
||||
template+='cells["'
|
||||
template+="${args[--index]}"
|
||||
template+='"].value'
|
||||
else
|
||||
template+='(row.index + 1)'
|
||||
fi
|
||||
template+='+ "\t" + cn + "\t" +'
|
||||
template+='forNonBlank(cells[cn].value, v, if(v.contains(" "), if(v.contains('\''"'\''), '\''"'\'' + v.replace('\''"'\'','\''""'\'') + '\''"'\'', '\''"'\'' + v + '\''"'\''), v),"")'
|
||||
template+='+ "\n")'
|
||||
template+='}}'
|
||||
|
||||
# assemble specific post data
|
||||
data+=("project=${projectid}")
|
||||
data+=("format=template")
|
||||
data+=("template=${template}")
|
||||
|
||||
# call post_export function to post data and validate results
|
||||
post_export "${data[@]}"
|
||||
|
||||
}
|
||||
|
||||
# :command.function
|
||||
orcli_test_command() {
|
||||
# src/test_command.sh
|
||||
|
@ -1999,6 +2104,13 @@ parse_requirements() {
|
|||
shift $#
|
||||
;;
|
||||
|
||||
search)
|
||||
action="search"
|
||||
shift
|
||||
orcli_search_parse_requirements "$@"
|
||||
shift $#
|
||||
;;
|
||||
|
||||
test)
|
||||
action="test"
|
||||
shift
|
||||
|
@ -2900,6 +3012,80 @@ orcli_info_parse_requirements() {
|
|||
|
||||
}
|
||||
|
||||
# :command.parse_requirements
|
||||
orcli_search_parse_requirements() {
|
||||
# :command.fixed_flags_filter
|
||||
while [[ $# -gt 0 ]]; do
|
||||
case "${1:-}" in
|
||||
--help | -h)
|
||||
long_usage=yes
|
||||
orcli_search_usage
|
||||
exit
|
||||
;;
|
||||
|
||||
*)
|
||||
break
|
||||
;;
|
||||
|
||||
esac
|
||||
done
|
||||
|
||||
# :command.command_filter
|
||||
action="search"
|
||||
|
||||
# :command.parse_requirements_while
|
||||
while [[ $# -gt 0 ]]; do
|
||||
key="$1"
|
||||
case "$key" in
|
||||
# :flag.case
|
||||
--index)
|
||||
|
||||
# :flag.case_arg
|
||||
if [[ -n ${2+x} ]]; then
|
||||
|
||||
args['--index']="$2"
|
||||
shift
|
||||
shift
|
||||
else
|
||||
printf "%s\n" "--index requires an argument: --index COLUMN" >&2
|
||||
exit 1
|
||||
fi
|
||||
;;
|
||||
|
||||
-?*)
|
||||
printf "invalid option: %s\n" "$key" >&2
|
||||
exit 1
|
||||
;;
|
||||
|
||||
*)
|
||||
# :command.parse_requirements_case
|
||||
# :command.parse_requirements_case_simple
|
||||
if [[ -z ${args['project']+x} ]]; then
|
||||
|
||||
args['project']=$1
|
||||
shift
|
||||
elif [[ -z ${args['regex']+x} ]]; then
|
||||
|
||||
args['regex']=$1
|
||||
shift
|
||||
else
|
||||
printf "invalid argument: %s\n" "$key" >&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
;;
|
||||
|
||||
esac
|
||||
done
|
||||
|
||||
# :command.required_args_filter
|
||||
if [[ -z ${args['project']+x} ]]; then
|
||||
printf "missing required argument: PROJECT\nusage: orcli search PROJECT [REGEX] [OPTIONS]\n" >&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
}
|
||||
|
||||
# :command.parse_requirements
|
||||
orcli_test_parse_requirements() {
|
||||
# :command.fixed_flags_filter
|
||||
|
@ -3514,6 +3700,7 @@ run() {
|
|||
"import tsv") orcli_import_tsv_command ;;
|
||||
"list") orcli_list_command ;;
|
||||
"info") orcli_info_command ;;
|
||||
"search") orcli_search_command ;;
|
||||
"test") orcli_test_command ;;
|
||||
"transform") orcli_transform_command ;;
|
||||
"export") orcli_export_command ;;
|
||||
|
|
|
@ -17,6 +17,7 @@ examples:
|
|||
- orcli list
|
||||
- orcli info "duplicates"
|
||||
- orcli transform "duplicates" "https://git.io/fj5ju"
|
||||
- orcli search "duplicates" "^Ben"
|
||||
- orcli export tsv "duplicates"
|
||||
- orcli export tsv "duplicates" --output "duplicates.tsv"
|
||||
- orcli delete "duplicates"
|
||||
|
@ -206,6 +207,25 @@ commands:
|
|||
- orcli info 1234567890123
|
||||
- orcli info "duplicates" | jq -r .columns[]
|
||||
|
||||
- name: search
|
||||
help: |-
|
||||
apply regex to each column and print matches in flattened tsv format
|
||||
output: index column value
|
||||
args:
|
||||
- *project
|
||||
- ®ex
|
||||
name: regex
|
||||
help: search term (regular expression, case-sensitive)
|
||||
flags:
|
||||
- long: --index
|
||||
help: print column values instead of row.index in the first column of the output
|
||||
arg: column
|
||||
examples:
|
||||
- orcli search "duplicates" "^Ben"
|
||||
- orcli search 1234567890123 "^Ben"
|
||||
- orcli search "duplicates" "^F$" --index "email"
|
||||
- orcli search "duplicates" | column -t -s \$'\t'
|
||||
|
||||
- name: test
|
||||
help: run functional tests on tmp OpenRefine workspace
|
||||
|
||||
|
|
|
@ -66,6 +66,10 @@ send_completions() {
|
|||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help -h csv tsv")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' \'search\'*)'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help --index -h")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' \'export\'*)'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help -h template tsv")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
|
@ -87,7 +91,7 @@ send_completions() {
|
|||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' *)'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help --version -h -v completions delete export import info list run test transform")" -- "$cur" )'
|
||||
echo $' while read -r; do COMPREPLY+=( "$REPLY" ); done < <( compgen -W "$(_orcli_completions_filter "--help --version -h -v completions delete export import info list run search test transform")" -- "$cur" )'
|
||||
echo $' ;;'
|
||||
echo $''
|
||||
echo $' esac'
|
||||
|
|
|
@ -0,0 +1,34 @@
|
|||
# shellcheck shell=bash disable=SC2154
|
||||
|
||||
# get project id
|
||||
projectid="$(get_id "${args[project]}")"
|
||||
|
||||
# set facets config
|
||||
args['--facets']='[ { "type": "list", "expression": "grel:filter(row.columnNames,cn,cells[cn].value.find(/'
|
||||
args['--facets']+="${args[regex]}"
|
||||
args['--facets']+='/).length()>0).length()>0", "columnName": "", "selection": [ { "v": { "v": true } } ] } ]'
|
||||
|
||||
# set template
|
||||
template='{{'
|
||||
template+='forEach(filter(row.columnNames, cn, cells[cn].value.find(/'
|
||||
template+="${args[regex]}"
|
||||
template+='/).length()>0), cn,'
|
||||
if [[ ${args[--index]} ]]; then
|
||||
template+='cells["'
|
||||
template+="${args[--index]}"
|
||||
template+='"].value'
|
||||
else
|
||||
template+='(row.index + 1)'
|
||||
fi
|
||||
template+='+ "\t" + cn + "\t" +'
|
||||
template+='forNonBlank(cells[cn].value, v, if(v.contains(" "), if(v.contains('\''"'\''), '\''"'\'' + v.replace('\''"'\'','\''""'\'') + '\''"'\'', '\''"'\'' + v + '\''"'\''), v),"")'
|
||||
template+='+ "\n")'
|
||||
template+='}}'
|
||||
|
||||
# assemble specific post data
|
||||
data+=("project=${projectid}")
|
||||
data+=("format=template")
|
||||
data+=("template=${template}")
|
||||
|
||||
# call post_export function to post data and validate results
|
||||
post_export "${data[@]}"
|
|
@ -0,0 +1,36 @@
|
|||
#!/bin/bash
|
||||
|
||||
t="search"
|
||||
|
||||
# create tmp directory
|
||||
tmpdir="$(mktemp -d)"
|
||||
trap '{ rm -rf "${tmpdir}"; }' 0 2 3 15
|
||||
|
||||
# input
|
||||
cat << "DATA" > "${tmpdir}/${t}.csv"
|
||||
email,name,state,gender,purchase
|
||||
danny.baron@example1.com,Danny Baron,CA,M,TV
|
||||
melanie.white@example2.edu,Melanie White,NC,F,iPhone
|
||||
danny.baron@example1.com,D. Baron,CA,M,Winter jacket
|
||||
ben.tyler@example3.org,Ben Tyler,NV,M,Flashlight
|
||||
arthur.duff@example4.com,Arthur Duff,OR,M,Dining table
|
||||
danny.baron@example1.com,Daniel Baron,CA,M,Bike
|
||||
jean.griffith@example5.org,Jean Griffith,WA,F,Power drill
|
||||
melanie.white@example2.edu,Melanie White,NC,F,iPad
|
||||
ben.morisson@example6.org,Ben Morisson,FL,M,Amplifier
|
||||
arthur.duff@example4.com,Arthur Duff,OR,M,Night table
|
||||
DATA
|
||||
|
||||
# assertion
|
||||
cat << "DATA" > "${tmpdir}/${t}.assert"
|
||||
melanie.white@example2.edu name Melanie White
|
||||
melanie.white@example2.edu name "Melanie White"
|
||||
DATA
|
||||
|
||||
# action
|
||||
cd "${tmpdir}" || exit 1
|
||||
orcli import csv "${t}.csv" --projectName "${t}"
|
||||
orcli search "${t}" "^Mel" --index "email" > "${t}.output"
|
||||
|
||||
# test
|
||||
diff -u "${t}.assert" "${t}.output"
|
Loading…
Reference in New Issue