103 lines
3.7 KiB
YAML
103 lines
3.7 KiB
YAML
# https://github.com/opencultureconsulting/openrefine-task-runner
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version: '3'
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includes:
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example-doaj: example-doaj
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example-duplicates: example-duplicates
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example-powerhouse: example-powerhouse
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# add the directory name of your project here
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silent: true
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output: prefixed
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env:
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OPENREFINE:
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sh: readlink -m .openrefine/refine
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CLIENT:
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sh: readlink -m .openrefine/client
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tasks:
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default:
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desc: execute all projects in parallel
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deps:
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- task: example-doaj:refine
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- task: example-duplicates:refine
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- task: example-powerhouse:refine
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# add the directory name of your project here
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cmds:
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- task: check
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install:
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desc: (re)install OpenRefine and openrefine-client into subdirectory .openrefine
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cmds:
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- | # delete existing install and recreate folder
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rm -rf .openrefine
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mkdir -p .openrefine
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- > # download OpenRefine archive
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wget --no-verbose -O openrefine.tar.gz
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https://github.com/OpenRefine/OpenRefine/releases/download/3.5.0/openrefine-linux-3.5.0.tar.gz
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- | # install OpenRefine into subdirectory .openrefine
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tar -xzf openrefine.tar.gz -C .openrefine --strip 1
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rm openrefine.tar.gz
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- | # optimize OpenRefine for batch processing
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sed -i 's/cd `dirname $0`/cd "$(dirname "$0")"/' ".openrefine/refine" # fix path issue in OpenRefine startup file
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sed -i '$ a JAVA_OPTIONS=-Drefine.headless=true' ".openrefine/refine.ini" # do not try to open OpenRefine in browser
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sed -i 's/#REFINE_AUTOSAVE_PERIOD=60/REFINE_AUTOSAVE_PERIOD=1440/' ".openrefine/refine.ini" # set autosave period from 5 minutes to 25 hours
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- > # download openrefine-client into subdirectory .openrefine
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wget --no-verbose -O .openrefine/client
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https://github.com/opencultureconsulting/openrefine-client/releases/download/v0.3.10/openrefine-client_0-3-10_linux
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- chmod +x .openrefine/client # make client executable
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start:
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dir: ./{{.DIR}}
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cmds:
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- | # verify that OpenRefine is installed
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if [ ! -f "$OPENREFINE" ]; then
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echo 1>&2 "OpenRefine missing; try task install"; exit 1
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fi
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- | # delete temporary files and log file of previous run
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rm -rf ./*.project* workspace.json
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rm -rf "{{.PROJECT}}.log"
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- > # launch OpenRefine with specific data directory and redirect its output to a log file
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"$OPENREFINE" -v warn -p {{.PORT}} -m {{.RAM}}
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-d ../{{.DIR}}
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>> "{{.PROJECT}}.log" 2>&1 &
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- | # wait until OpenRefine API is available
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timeout 30s bash -c "until
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wget -q -O - -o /dev/null http://localhost:{{.PORT}} | cat | grep -q -o OpenRefine
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do sleep 1
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done"
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stop:
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dir: ./{{.DIR}}
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cmds:
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- | # shut down OpenRefine gracefully
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PID=$(lsof -t -i:{{.PORT}})
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kill $PID
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while ps -p $PID > /dev/null; do sleep 1; done
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- > # archive the OpenRefine project
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tar cfz
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"{{.PROJECT}}.openrefine.tar.gz"
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-C $(grep -l "{{.PROJECT}}" *.project/metadata.json | cut -d '/' -f 1)
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.
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- rm -rf ./*.project* workspace.json # delete temporary files
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kill:
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dir: ./{{.DIR}}
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cmds:
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- | # shut down OpenRefine immediately to save time and disk space
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PID=$(lsof -t -i:{{.PORT}})
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kill -9 $PID
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while ps -p $PID > /dev/null; do sleep 1; done
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- rm -rf ./*.project* workspace.json # delete temporary files
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check:
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desc: check OpenRefine log for any warnings and exit on error
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dir: ./{{.DIR}}
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cmds:
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- | # find log file(s) and check for "exception" or "error"
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if grep -i 'exception\|error' $(find . -name '*.log'); then
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echo 1>&2 "log contains warnings!"; exit 1
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fi
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