78 lines
2.6 KiB
YAML
78 lines
2.6 KiB
YAML
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version: '3'
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tasks:
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main:
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desc: Library Carpentry Lesson covering DOAJ
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cmds:
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- task: refine
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- task: :check # check OpenRefine log for any warnings and exit on error
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vars: {PROJECT: '{{splitList ":" .TASK | first}}'}
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refine:
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vars:
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PORT: 3335 # assign a different port for each project
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RAM: 2048M # maximum RAM for OpenRefine java heap space
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PROJECT: '{{splitList ":" .TASK | first}}'
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deps: # will be executed each run independent of up-to-date check
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- task: download
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cmds: # tasks prepended with ":" are defined in Taskfile.yml
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- task: :start
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vars: {PROJECT: '{{.PROJECT}}', PORT: '{{.PORT}}', RAM: '{{.RAM}}'}
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- task: import
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vars: {PROJECT: '{{.PROJECT}}', PORT: '{{.PORT}}'}
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- task: apply
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vars: {PROJECT: '{{.PROJECT}}', PORT: '{{.PORT}}'}
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- task: export
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vars: {PROJECT: '{{.PROJECT}}', PORT: '{{.PORT}}'}
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- task: stats
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vars: {PROJECT: '{{.PROJECT}}', PORT: '{{.PORT}}'}
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- task: :stop
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vars: {PROJECT: '{{.PROJECT}}', PORT: '{{.PORT}}'}
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sources:
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- input/**
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- config/**
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generates:
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- output/openrefine.log
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- output/{{.PROJECT}}.openrefine.tar.gz
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ignore_error: true # workaround to avoid an orphaned Java process on error https://github.com/go-task/task/issues/141
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download:
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cmds:
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- mkdir -p input config
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- wget --no-verbose -O input/doaj-article-sample.csv https://github.com/felixlohmeier/openrefine-kimws2019/raw/master/doaj-article-sample.csv
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- wget --no-verbose -O config/doaj-openrefine.json https://github.com/felixlohmeier/openrefine-kimws2019/raw/master/doaj-openrefine.json
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import:
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dir: input
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cmds:
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- | # import file
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../../openrefine/client -P {{.PORT}} \
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--create doaj-article-sample.csv \
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--projectName {{.PROJECT}}
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ignore_error: true # workaround
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apply:
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dir: config
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cmds:
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- | # apply transformation rules
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../../openrefine/client -P {{.PORT}} {{.PROJECT}} \
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--apply doaj-openrefine.json
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ignore_error: true # workaround
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export:
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dir: output
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cmds:
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- | # export to file; use readlink to log full path to output file
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../../openrefine/client -P {{.PORT}} {{.PROJECT}} \
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--output "$(readlink -m doaj-results.tsv)"
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ignore_error: true # workaround
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stats:
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cmds:
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- ps -o start,etime,%mem,%cpu,rss -p $(lsof -t -i:{{.PORT}}) # print allocated system resources
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ignore_error: true # workaround
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default: # enable standalone execution (running `task` in project directory)
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cmds:
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- PROJECT="${PWD##*/}:main" && cd .. && task "$PROJECT"
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