768 lines
19 KiB
Bash
Executable File
768 lines
19 KiB
Bash
Executable File
#!/bin/bash
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# Bibliotheca Vorverarbeitung
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# - Export von einer der Bibliotheken importieren
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# - in Tabellenformat umwandeln
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# - als TSV exportieren
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# =============================== ENVIRONMENT ================================ #
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# source the main script
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source "${BASH_SOURCE%/*}/../bash-refine.sh" || exit 1
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# read input
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if [[ $1 ]]; then
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p="$(basename "$1" .imp)"
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projects[$p]="$(readlink -e "$1")"
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else
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echo 1>&2 "Please provide path to input file"; exit 1
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fi
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# check requirements, set trap, create workdir and tee to logfile
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init
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# ================================= STARTUP ================================== #
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checkpoint "Startup"; echo
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# print environment variables
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printenv | grep REFINE; echo
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# start OpenRefine server
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refine_start; echo
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# ================================== IMPORT ================================== #
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checkpoint "Import"; echo
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# Line-based text files
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# Character encoding: ISO-8859-1
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# Store blank rows deaktivieren
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# ignore first 1 line(s) at the beginning of file
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echo "import file" "${projects[$p]}" "..."
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if curl -fs --write-out "%{redirect_url}\n" \
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--form project-file="@${projects[$p]}" \
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--form project-name="${p}" \
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--form format="line-based" \
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--form options='{
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"encoding": "ISO-8859-1",
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"storeBlankRows": "false",
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"ignoreLines": 1
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}' \
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"${endpoint}/command/core/create-project-from-upload$(refine_csrf)" \
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> "${workdir}/${p}.id"
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then
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log "imported ${projects[$p]} as ${p}"
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else
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error "import of ${projects[$p]} failed!"
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fi
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refine_store "${p}" "${workdir}/${p}.id" || error "import of ${p} failed!"
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echo
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# ================================ TRANSFORM ================================= #
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checkpoint "Transform"; echo
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# ------------------------- Makulierte Medien löschen ------------------------ #
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# spec_Z_03
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# löscht alle Titel und deren Exemplare, die nur makulierte Ex. enthalten
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# löscht dann alle verbliebenen makulierten Ex.
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echo "Makulierte Medien löschen..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/column-addition",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "*********M",
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"mode": "text",
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"caseSensitive": false,
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"invert": false
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}
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],
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"mode": "record-based"
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},
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"baseColumnName": "Column 1",
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"expression": "grel:value",
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"onError": "set-to-blank",
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"newColumnName": "tmp",
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"columnInsertIndex": 1
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},
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{
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"op": "core/column-move",
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"columnName": "tmp",
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"index": 0
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},
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{
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"op": "core/row-removal",
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"engineConfig": {
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"facets": [
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{
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"type": "list",
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"name": "Column 1",
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"expression": "grel:if(isNonBlank(cells['tmp'].value),with(row.record.cells[columnName].value.join('').find(/EXSTA ./).uniques().join(''),v,v),null)",
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"columnName": "Column 1",
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"invert": false,
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"omitBlank": false,
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"omitError": false,
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"selection": [
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{
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"v": {
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"v": "EXSTA M",
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"l": "EXSTA M"
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}
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}
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],
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"selectBlank": false,
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"selectError": false
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}
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],
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"mode": "record-based"
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}
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},
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{
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"op": "core/text-transform",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "*********E",
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"mode": "text",
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"caseSensitive": false,
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"invert": false
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}
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],
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"mode": "row-based"
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},
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"columnName": "tmp",
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"expression": "grel:cells['Column 1'].value",
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"onError": "keep-original",
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"repeat": false,
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"repeatCount": 10
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},
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{
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"op": "core/row-removal",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "EXSTA M",
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"mode": "text",
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"caseSensitive": false,
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"invert": false
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}
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],
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"mode": "record-based"
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}
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},
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{
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"op": "core/column-removal",
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"columnName": "tmp"
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}
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]
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JSON
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then
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log "transformed ${p} (${projects[$p]})"
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else
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error "transform ${p} (${projects[$p]}) failed!"
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fi
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echo
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# -------------------------- ACQ Datensätze löschen -------------------------- #
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# spec_Z_03
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# löscht alle Titel und deren Exemplare, die das Kennzeichen ACQ enthalten
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# löscht dann alle verbliebenen Exemplare mit Kennzeichen ACQ
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echo "ACQ Datensätze löschen..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/column-addition",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "*********M",
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"mode": "text",
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"caseSensitive": false,
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"invert": false
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}
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],
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"mode": "record-based"
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},
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"baseColumnName": "Column 1",
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"expression": "grel:value",
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"onError": "set-to-blank",
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"newColumnName": "tmp",
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"columnInsertIndex": 1
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},
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{
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"op": "core/column-move",
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"columnName": "tmp",
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"index": 0
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},
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{
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"op": "core/row-removal",
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"engineConfig": {
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"facets": [
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{
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"type": "list",
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"name": "Column 1",
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"expression": "grel:if(isNonBlank(cells['tmp'].value),with(row.record.cells[columnName].value.join('').find(/MEKZ ./).uniques().join(''),v,v),null)",
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"columnName": "Column 1",
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"invert": false,
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"omitBlank": false,
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"omitError": false,
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"selection": [
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{
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"v": {
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"v": "MEKZ ACQ",
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"l": "MEKZ ACQ"
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}
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}
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],
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"selectBlank": false,
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"selectError": false
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}
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],
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"mode": "record-based"
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}
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},
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{
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"op": "core/text-transform",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "*********E",
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"mode": "text",
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"caseSensitive": false,
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"invert": false
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}
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],
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"mode": "row-based"
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},
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"columnName": "tmp",
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"expression": "grel:cells['Column 1'].value",
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"onError": "keep-original",
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"repeat": false,
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"repeatCount": 10
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},
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{
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"op": "core/row-removal",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "MEKZ ACQ",
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"mode": "text",
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"caseSensitive": false,
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"invert": false
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}
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],
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"mode": "record-based"
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}
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},
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{
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"op": "core/column-removal",
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"columnName": "tmp"
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}
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]
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JSON
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then
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log "transformed ${p} (${projects[$p]})"
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else
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error "transform ${p} (${projects[$p]}) failed!"
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fi
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echo
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# ---------------------- Mehrzeilige Inhalte extrahieren --------------------- #
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# - Column 1 > Text filter > regular expression aktivieren > ^\* > invert
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# -- Column 1 > Edit column > Add column based on this column...
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# > value > value.slice(1)
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# -- Column 1 > Edit cells > Transform... > null
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echo "Mehrzeilige Inhalte extrahieren..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/column-addition",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "^\\*",
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"mode": "regex",
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"caseSensitive": false,
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"invert": true
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}
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],
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"mode": "row-based"
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},
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"baseColumnName": "Column 1",
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"expression": "grel:value.slice(1)",
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"onError": "set-to-blank",
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"newColumnName": "value",
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"columnInsertIndex": 1
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},
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{
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"op": "core/text-transform",
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"engineConfig": {
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"facets": [
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{
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"type": "text",
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"name": "Column 1",
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"columnName": "Column 1",
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"query": "^\\*",
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"mode": "regex",
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"caseSensitive": false,
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"invert": true
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}
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],
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"mode": "row-based"
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},
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"columnName": "Column 1",
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"expression": "grel:null",
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"onError": "keep-original",
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"repeat": false,
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"repeatCount": 10
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}
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]
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JSON
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then
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log "transformed ${p} (${projects[$p]})"
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else
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error "transform ${p} (${projects[$p]}) failed!"
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fi
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echo
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# ---------------------------- Leerzeilen löschen ---------------------------- #
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# - All > Facet > Facet by blank > true
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# - All > Edit rows > Remove all matching rows
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echo "Leerzeilen löschen..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/row-removal",
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"engineConfig": {
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"facets": [
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{
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"type": "list",
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"name": "Blank Rows",
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"expression": "(filter(row.columnNames,cn,isNonBlank(cells[cn].value)).length()==0).toString()",
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"columnName": "",
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"invert": false,
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"omitBlank": false,
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"omitError": false,
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"selection": [
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{
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"v": {
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"v": "true",
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"l": "true"
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}
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}
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],
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"selectBlank": false,
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"selectError": false
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}
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],
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"mode": "row-based"
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}
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}
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]
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JSON
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then
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log "transformed ${p} (${projects[$p]})"
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else
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error "transform ${p} (${projects[$p]}) failed!"
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fi
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echo
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# ------------------------ Felder und Werte aufteilen ------------------------ #
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# - value > Facet > Customized facets > Facet by blank > true
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# -- value > Edit cells > Transform... > cells['Column 1'].value.slice(9)
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# - Column 1 > Edit cells.> Transform > value[3,8]
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# - Column 1 > Edit column > Rename this column > key
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echo "Felder und Werte aufteilen..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/text-transform",
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"engineConfig": {
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"facets": [
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{
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"type": "list",
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"name": "value",
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"expression": "isBlank(value)",
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"columnName": "value",
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"invert": false,
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"omitBlank": false,
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"omitError": false,
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"selection": [
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{
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"v": {
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"v": true,
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"l": "true"
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}
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}
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],
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"selectBlank": false,
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"selectError": false
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}
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],
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"mode": "row-based"
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},
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"columnName": "value",
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"expression": "grel:cells['Column 1'].value.slice(9)",
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"onError": "keep-original",
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"repeat": false,
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"repeatCount": 10
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},
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{
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"op": "core/text-transform",
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"engineConfig": {
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"facets": [],
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"mode": "row-based"
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},
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"columnName": "Column 1",
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"expression": "grel:value[3,8]",
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"onError": "keep-original",
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"repeat": false,
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"repeatCount": 10
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},
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{
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"op": "core/column-rename",
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"oldColumnName": "Column 1",
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"newColumnName": "key"
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}
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]
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JSON
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then
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log "transformed ${p} (${projects[$p]})"
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else
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error "transform ${p} (${projects[$p]}) failed!"
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fi
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echo
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# ----------------- Mehrzeilige Inhalte (mit #) zusammenführen --------------- #
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# - value > Edit cells > Join multi-valued cells... > ␟
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# (das ist das Unicode-Zeichen U+241F)
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echo "Mehrzeilige Inhalte (mit #) zusammenführen..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/multivalued-cell-join",
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"columnName": "value",
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"keyColumnName": "key",
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"separator": "␟"
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}
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]
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JSON
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then
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log "transformed ${p} (${projects[$p]})"
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else
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error "transform ${p} (${projects[$p]}) failed!"
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fi
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echo
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# ----------------------- Feldnamen um M oder E ergänzen --------------------- #
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# - key > Facet > Text facet > *****
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# -- value > Edit column > Add column based on this column... > typ > value
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# - typ > Edit cells > Fill down
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# - key > Facet > Text facet > *****
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# -- All > Edit rows > Remove all matching rows
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# - key > Edit cells > Transform... > cells['typ'].value + '|' + value
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# - typ > Edit column > Remove this column
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echo "Feldnamen um M oder E ergänzen..."
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if curl -fs \
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--data project="${projects[$p]}" \
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--data-urlencode "operations@-" \
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"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
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<< "JSON"
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[
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{
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"op": "core/column-addition",
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"engineConfig": {
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"facets": [
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{
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"type": "list",
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"name": "key",
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"expression": "value",
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"columnName": "key",
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"invert": false,
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"omitBlank": false,
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"omitError": false,
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"selection": [
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{
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"v": {
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"v": "*****",
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"l": "*****"
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}
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}
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],
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"selectBlank": false,
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"selectError": false
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}
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],
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"mode": "row-based"
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},
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"baseColumnName": "value",
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"expression": "grel:value",
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"onError": "set-to-blank",
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"newColumnName": "typ",
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"columnInsertIndex": 2
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},
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{
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"op": "core/fill-down",
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"engineConfig": {
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"facets": [],
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"mode": "row-based"
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},
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"columnName": "typ"
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},
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{
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"op": "core/row-removal",
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"engineConfig": {
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"facets": [
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{
|
|
"type": "list",
|
|
"name": "key",
|
|
"expression": "value",
|
|
"columnName": "key",
|
|
"invert": false,
|
|
"omitBlank": false,
|
|
"omitError": false,
|
|
"selection": [
|
|
{
|
|
"v": {
|
|
"v": "*****",
|
|
"l": "*****"
|
|
}
|
|
}
|
|
],
|
|
"selectBlank": false,
|
|
"selectError": false
|
|
}
|
|
],
|
|
"mode": "row-based"
|
|
}
|
|
},
|
|
{
|
|
"op": "core/text-transform",
|
|
"engineConfig": {
|
|
"facets": [],
|
|
"mode": "row-based"
|
|
},
|
|
"columnName": "key",
|
|
"expression": "grel:cells['typ'].value + '|' + value",
|
|
"onError": "keep-original",
|
|
"repeat": false,
|
|
"repeatCount": 10
|
|
},
|
|
{
|
|
"op": "core/column-removal",
|
|
"columnName": "typ"
|
|
}
|
|
]
|
|
JSON
|
|
then
|
|
log "transformed ${p} (${projects[$p]})"
|
|
else
|
|
error "transform ${p} (${projects[$p]}) failed!"
|
|
fi
|
|
echo
|
|
|
|
# --------------------- Mehrfachbelegungen zusammenführen -------------------- #
|
|
|
|
# - key > Edit cells > Blank down
|
|
# - value > Edit cells > join multi-valued cells... > ␟
|
|
|
|
echo "Mehrfachbelegungen zusammenführen..."
|
|
if curl -fs \
|
|
--data project="${projects[$p]}" \
|
|
--data-urlencode "operations@-" \
|
|
"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
|
|
<< "JSON"
|
|
[
|
|
{
|
|
"op": "core/blank-down",
|
|
"engineConfig": {
|
|
"facets": [],
|
|
"mode": "row-based"
|
|
},
|
|
"columnName": "key"
|
|
},
|
|
{
|
|
"op": "core/multivalued-cell-join",
|
|
"columnName": "value",
|
|
"keyColumnName": "key",
|
|
"separator": "␟"
|
|
}
|
|
]
|
|
JSON
|
|
then
|
|
log "transformed ${p} (${projects[$p]})"
|
|
else
|
|
error "transform ${p} (${projects[$p]}) failed!"
|
|
fi
|
|
echo
|
|
|
|
# -------------------- Titeldaten-Felder mit Zahlen löschen ------------------ #
|
|
|
|
# außer 025z 026 026k 052 076b 076d
|
|
echo "Titeldaten-Felder mit Zahlen löschen..."
|
|
if curl -fs \
|
|
--data project="${projects[$p]}" \
|
|
--data-urlencode "operations@-" \
|
|
"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
|
|
<< "JSON"
|
|
[
|
|
{
|
|
"op": "core/row-removal",
|
|
"engineConfig": {
|
|
"facets": [
|
|
{
|
|
"type": "list",
|
|
"name": "key",
|
|
"expression": "grel:and(isNumeric(value[2,4].trim()), not(or(value[2,6] == '025z', value[2,6] == '026 ', value[2,6] == '026k', value[2,6] == '052 ', value[2,6] == '076b', value[2,6] == '076d')))",
|
|
"columnName": "key",
|
|
"invert": false,
|
|
"omitBlank": false,
|
|
"omitError": false,
|
|
"selection": [
|
|
{
|
|
"v": {
|
|
"v": true,
|
|
"l": "true"
|
|
}
|
|
}
|
|
],
|
|
"selectBlank": false,
|
|
"selectError": false
|
|
}
|
|
],
|
|
"mode": "row-based"
|
|
}
|
|
}
|
|
]
|
|
JSON
|
|
then
|
|
log "transformed ${p} (${projects[$p]})"
|
|
else
|
|
error "transform ${p} (${projects[$p]}) failed!"
|
|
fi
|
|
echo
|
|
|
|
# ------------------------------- Transponieren ------------------------------ #
|
|
|
|
# - key > Transpose > Columnize by key/value columns... > OK
|
|
|
|
echo "Transponieren..."
|
|
if curl -fs \
|
|
--data project="${projects[$p]}" \
|
|
--data-urlencode "operations@-" \
|
|
"${endpoint}/command/core/apply-operations$(refine_csrf)" > /dev/null \
|
|
<< "JSON"
|
|
[
|
|
{
|
|
"op": "core/key-value-columnize",
|
|
"keyColumnName": "key",
|
|
"valueColumnName": "value",
|
|
"noteColumnName": ""
|
|
}
|
|
]
|
|
JSON
|
|
then
|
|
log "transformed ${p} (${projects[$p]})"
|
|
else
|
|
error "transform ${p} (${projects[$p]}) failed!"
|
|
fi
|
|
echo
|
|
|
|
# ================================== EXPORT ================================== #
|
|
|
|
checkpoint "Export"; echo
|
|
|
|
format="tsv"
|
|
echo "export ${p} to ${format} file..."
|
|
if curl -fs \
|
|
--data project="${projects[$p]}" \
|
|
--data format="${format}" \
|
|
--data engine='{"facets":[],"mode":"row-based"}' \
|
|
"${endpoint}/command/core/export-rows" \
|
|
> "${workdir}/${p}.${format}"
|
|
then
|
|
log "exported ${p} (${projects[$p]}) to ${workdir}/${p}.${format}"
|
|
else
|
|
error "export of ${p} (${projects[$p]}) failed!"
|
|
fi
|
|
echo
|
|
|
|
# ================================== FINISH ================================== #
|
|
|
|
checkpoint "Finish"; echo
|
|
|
|
# stop OpenRefine server
|
|
refine_stop; echo
|
|
|
|
# calculate run time based on checkpoints
|
|
checkpoint_stats; echo
|
|
|
|
# word count on all files in workdir
|
|
count_output
|