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ba-sachsen-pica
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ba-sachsen-pica/Taskfile.yml

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# https://taskfile.dev
version: '3'
output: 'group'
vars:
DATE: '{{ now | date "20060102_150405"}}'
env:
REFINE_MEMORY: 8g
REFINE_ENDPOINT: http://localhost:3334
tasks:
default:
desc: Generierung PICA+
# deps: [bibliotheca, alephino]
cmds:
- task: alephino
- task: bibliotheca
- tasks/03-ba-sachsen.sh "output/02-bibliotheca-main"
sources:
- tasks/03-ba-sachsen.sh
# - output/02-alephino-main/alephino.csv
- output/02-bibliotheca-main/bibliotheca.csv
generates:
- output/03-ba-sachsen/ba-sachsen.pic
- output/03-ba-sachsen/ba-sachsen.openrefine.tar.gz
env:
REFINE_WORKDIR: output/03-ba-sachsen
REFINE_LOGFILE: log/03-ba-sachsen/{{.DATE}}.log
alephino:
desc: Alephino Hauptverarbeitung
# deps: [leipzig, riesa]
cmds:
- task: leipzig
- task: riesa
- tasks/02-alephino-main.sh "output/01-alephino-pre"
sources:
- tasks/02-alephino-main.sh
- output/01-alephino-pre/*.tsv
generates:
# - output/02-alephino-main/alephino.csv
- output/02-alephino-main/alephino.openrefine.tar.gz
env:
REFINE_ENDPOINT: http://localhost:3334
REFINE_WORKDIR: output/02-alephino-main
REFINE_LOGFILE: log/02-alephino-main/{{.DATE}}.log
bibliotheca:
desc: Bibliotheca Hauptverarbeitung
# deps: [bautzen, breitenbrunn, dresden, glauchau, plauen]
cmds:
- task: bautzen
- task: breitenbrunn
- task: dresden
- task: glauchau
# - task: plauen
- tasks/02-bibliotheca-main.sh "output/01-bibliotheca-pre"
sources:
- tasks/01-bibliotheca-pre.sh
- tasks/02-bibliotheca-main.sh
- output/01-bibliotheca-pre/*.tsv
generates:
- output/02-bibliotheca-main/bibliotheca.csv
- output/02-bibliotheca-main/bibliotheca.openrefine.tar.gz
env:
REFINE_ENDPOINT: http://localhost:3335
REFINE_WORKDIR: output/02-bibliotheca-main
REFINE_LOGFILE: log/02-bibliotheca-main/{{.DATE}}.log
bautzen:
desc: Bibliotheca Vorverarbeitung
cmds:
- tasks/01-bibliotheca-pre.sh "{{.INPUT}}"
sources:
- tasks/01-bibliotheca-pre.sh
- '{{.INPUT}}'
generates:
- output/01-bibliotheca-pre/bautzen.tsv
vars:
INPUT: '{{.INPUT | default "input/bautzen.imp"}}'
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "6G"}}'
REFINE_ENDPOINT: http://localhost:3334
REFINE_WORKDIR: output/01-bibliotheca-pre
REFINE_LOGFILE: log/01-bibliotheca-pre/{{.DATE}}_bautzen.log
breitenbrunn:
desc: Bibliotheca Vorverarbeitung
cmds:
- tasks/01-bibliotheca-pre.sh "{{.INPUT}}"
sources:
- tasks/01-bibliotheca-pre.sh
- '{{.INPUT}}'
generates:
- output/01-bibliotheca-pre/breitenbrunn.tsv
vars:
INPUT: '{{.INPUT | default "input/breitenbrunn.imp"}}'
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "4G"}}'
REFINE_ENDPOINT: http://localhost:3335
REFINE_WORKDIR: output/01-bibliotheca-pre
REFINE_LOGFILE: log/01-bibliotheca-pre/{{.DATE}}_breitenbrunn.log
dresden:
desc: Bibliotheca Vorverarbeitung
cmds:
- tasks/01-bibliotheca-pre.sh "{{.INPUT}}"
sources:
- tasks/01-bibliotheca-pre.sh
- '{{.INPUT}}'
generates:
- output/01-bibliotheca-pre/dresden.tsv
vars:
INPUT: '{{.INPUT | default "input/dresden.imp"}}'
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "7G"}}'
REFINE_ENDPOINT: http://localhost:3336
REFINE_WORKDIR: output/01-bibliotheca-pre
REFINE_LOGFILE: log/01-bibliotheca-pre/{{.DATE}}_dresden.log
leipzig:
desc: Alephino Vorverarbeitung
cmds:
- tasks/01-alephino-pre.sh "{{.TITEL}}" "{{.EXEMPLARE}}"
sources:
- tasks/01-alephino-pre.sh
- '{{.TITEL}}'
- '{{.EXEMPLARE}}'
generates:
- output/01-alephino-pre/leipzig.tsv
vars:
TITEL: '{{.TITEL | default "input/leipzig-titel.txt"}}'
EXEMPLARE: '{{.EXEMPLARE | default "input/leipzig-exemplare.txt"}}'
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "7G"}}'
REFINE_ENDPOINT: http://localhost:3337
REFINE_WORKDIR: output/01-alephino-pre
REFINE_LOGFILE: log/01-alephino-pre/{{.DATE}}_leipzig.log
glauchau:
desc: Bibliotheca Vorverarbeitung
cmds:
- tasks/01-bibliotheca-pre.sh "{{.INPUT}}"
sources:
- tasks/01-bibliotheca-pre.sh
- '{{.INPUT}}'
generates:
- output/01-bibliotheca-pre/glauchau.tsv
vars:
INPUT: '{{.INPUT | default "input/glauchau.imp"}}'
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "4G"}}'
REFINE_ENDPOINT: http://localhost:3338
REFINE_WORKDIR: output/01-bibliotheca-pre
REFINE_LOGFILE: log/01-bibliotheca-pre/{{.DATE}}_glauchau.log
plauen:
desc: Bibliotheca Vorverarbeitung
cmds:
- tasks/01-bibliotheca-pre.sh "input/plauen.imp"
sources:
- tasks/01-bibliotheca-pre.sh
- input/plauen.imp
generates:
- output/01-bibliotheca-pre/plauen.tsv
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "2G"}}'
REFINE_ENDPOINT: http://localhost:3339
REFINE_WORKDIR: output/01-bibliotheca-pre
REFINE_LOGFILE: log/01-bibliotheca-pre/{{.DATE}}_plauen.log
riesa:
desc: Alephino Vorverarbeitung
cmds:
- tasks/01-alephino-pre.sh "{{.TITEL}}" "{{.EXEMPLARE}}"
sources:
- tasks/01-alephino-pre.sh
- '{{.TITEL}}'
- '{{.EXEMPLARE}}'
generates:
- output/01-alephino-pre/riesa.tsv
vars:
TITEL: '{{.TITEL | default "input/riesa-titel.txt"}}'
EXEMPLARE: '{{.EXEMPLARE | default "input/riesa-exemplare.txt"}}'
env:
REFINE_MEMORY: '{{.REFINE_MEMORY | default "7G"}}'
REFINE_ENDPOINT: http://localhost:3340
REFINE_WORKDIR: output/01-alephino-pre
REFINE_LOGFILE: log/01-alephino-pre/{{.DATE}}_riesa.log
clean:
desc: Alle Daten löschen (reset auf Ausgangszustand)
cmds:
- rm -r lib log output
mkdir:
desc: Ordner erstellen
cmds:
- mkdir -p output/01-alephino-pre log/01-alephino-pre
- mkdir -p output/01-bibliotheca-pre log/01-bibliotheca-pre
- mkdir -p output/02-alephino-main log/02-alephino-main
- mkdir -p output/02-bibliotheca-main log/02-bibliotheca-main
- mkdir -p output/03-ba-sachsen log/03-ba-sachsen
barcodes:
desc: Ermitteln von Dubletten
deps: [default]
cmds:
- mkdir -p output/barcodes
# Bibliotheca Barcodes extrahieren
- for f in input/*.imp; do grep '^\*I BARCO ' "$f" | dos2unix | cut -c 10- | sort > "output/barcodes/$(f=${f##*/}; echo ${f%.*}).raw"; done
# Alephino Barcodes extrahieren
- for f in input/*-exemplare.txt; do grep '^120 ' "$f" | cut -c 6- | sort > "output/barcodes/$(f=${f##*/}; echo ${f%-*}).raw"; done
# Extrahierte Barcodes gegen generiertes PICA+ abgleichen
- grep '209G/' output/03-ba-sachsen/ba-sachsen.pic | cut -c 14- | sort > output/barcodes/pica
- for f in output/barcodes/*.raw; do comm -12 "$f" output/barcodes/pica > "output/barcodes/$(f=${f##*/}; echo ${f%.*}).filtered"; done
# Plauen, Leipzig, Riesa vorübergehend nicht filtern
- for f in leipzig riesa plauen; do cp output/barcodes/$f.raw output/barcodes/$f.filtered; done
# Dublette Barcodes Gesamtdubletten ermitteln
- sort output/barcodes/*.filtered | uniq -d > output/barcodes/duplicates
# Dubletten für jeden Teil ermitteln
- (cd output/barcodes && for f in *.filtered ; do grep -FxH -f duplicates "$f" | sort | join -o 2.1 -t ':' -a1 -2 2 duplicates - | cut -d '.' -f 1 > "${f}".tmp; done)
# Ergebnisse in Tabelle zusammenführen
- paste output/barcodes/duplicates output/barcodes/*.tmp | awk -F $'\t' '{sub($1, "\"&\""); print}' > output/barcodes/duplicates.tsv && rm output/barcodes/*.tmp
# Bearbeitungsstand
- 'echo "Seit Juli 2019 neu hinzugekommene Dubletten: $(comm -13 input/duplicates-2019-07-10.txt output/barcodes/duplicates | wc -l)"'
- 'echo "Seit Juli 2019 bearbeitete Dubletten: $(comm -23 input/duplicates-2019-07-10.txt output/barcodes/duplicates | wc -l)"'
- 'echo "Noch zu bearbeitende Dubletten: $(wc -l < output/barcodes/duplicates)"'
# sources:
# - input/*
# generates:
# - output/barcodes/duplicates.tsv
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